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Table 1 The top five most tissue-specific genes for representative tissues

From: Promoter features related to tissue specificity as measured by Shannon entropy

Tissue

Probe set ID

H

Q

RefSeq

Description

Amygdala

96055_at

3.2

5.8

NM_031161

Cholecystokinin

 

93178_at

2.7

5.8

NM_019867

Neuronal guanine nucleotide exchange factor

 

93273_at

3.7

5.8

NM_009221

Synuclein, alpha

 

92943_at

3.5

6.0

NM_008165

Glutamate receptor, ionotropic, AMPA1 (alpha 1)

 

95436_at

3.3

6.1

NM_009215

Somatostatin

Lymph node

98406_at

2.7

4.0

NM_013653

Chemokine (C-C motif) ligand 5

 

98063_at

1.6

4.1

-

Glycosylation dependent cell adhesion molecule 1

 

99446_at

2.5

4.1

NM_007641

Membrane-spanning 4-domains, subfamily A, member 1

 

92741_g_at

3.3

4.5

-

Immunoglobulin heavy chain 4 (serum IgG1)

 

102940_at

2.8

4.6

NM_008518

Lymphotoxin B

Liver

94777_at

1.3

2.1

-

Albumin 1

 

101287_s_at

1.6

2.2

NM_010005

Cytochrome P450, 2d10

 

99269_g_at

1.5

2.2

NM_019911

Tryptophan 2,3-dioxygenase

 

100329_at

1.4

2.3

NM_009246

Serine protease inhibitor 1-4

 

94318_at

1.6

2.3

NM_013475

Apolipoprotein H

  1. Genes must express at 200 AU in one or more tissues. A full list of all genes is available in the Additional data files 1 and 2.