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Table 6 The 65 genes with variable expression patterns among the five accessions

From: Contribution of transcriptional regulation to natural variations in Arabidopsis

Functional category ATH1 hits GenBank ID Description
30 CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM
14807_at At2g17170 gb|AAD25145.1| Protein kinase family contains protein kinase domain, Pfam:PF00069
12528_at At2g22200 gb|AAD23620.1| AP2 domain transcription factor
16848_at At2g20470 gb|AAD25647.1| Protein kinase, putative contains protein kinase domain, Pfam:PF00069
15069_s_at At2g28060 gb|AAC98460.1| AKINbeta3 protein, protein kinase-related
12358_at At1g54610 gb|AAC64876.1| Similar to CRK1 protein GI:7671528 from [Beta vulgaris]
18510_at At1g60630 gb|AAB71975.1| Leucine rich repeat protein family, similar to receptor kinase GI:498278 from [Petunia integrifolia]
16881_at At1g69990 gb|AAB61113.1| Leucine-rich repeat transmembrane protein kinase, putative
18478_at At1g78530 gb|AAD30583.1| Protein kinase family contains protein kinase domain, Pfam:PF00069
17223_at At1g78980 gb|AAC17069.1| Leucine-rich repeat transmembrane protein kinase, putative
16801_s_at At4g29990 emb|CAB43834.1| Identical to light repressible receptor protein kinase
16849_at At4g36070 emb|CAA18501.1| Calcium-dependent serine/threonine protein kinase isoform AK1
11 TRANSCRIPTION
18443_at At2g03060 gb|AAC32924.1| MADS-box protein
14963_at At1g09920 gb|AAB60744.1| Expressed protein, TRAF-type zinc finger-related
19242_at At2g13570 gb|AAD22680.1| CCAAT-box binding trancription factor -related
12528_at At2g22200 gb|AAD23620.1| AP2 domain transcription factor
12220_at At2g20100 gb|AAD24387.1| Expressed protein, bHLH - like protein (bHLH133)
14313_at At2g26130 gb|AAC31224.1| Hypothetical protein, zinc finger (C3HC4-type RING finger) family protein
16175_g_at At2g29610 gb|AAC35234.1| F-box protein family contains Pfam profile PF00646: F-box domain
14370_at At1g54550 gb|AAD25633.1| F-box protein family contains Pfam:PF00646 F-box domain
14760_at At3g46800 emb|CAB51185.1| CHP-rich zinc finger protein, putative
16209_s_at At4g10240 emb|CAB39777.1| CONSTANS B-box zinc finger family protein
14216_at At5g01290 gb|AAD56326.1| mRNA capping enzyme - like protein mRNA capping enzyme (HCE), Homo sapiens
18169_at At4g31615 emb|CAA19761.1| Transcriptional factor B3 family low similarity to reproductive meristem gene 1 from [Brassica oleracea var. botrytis]
12282_at At5g44800 gb|AAC79140.1| Chromodomain-helicase-DNA-binding (CHD) protein family similar to chromatin remodeling factor CHD3 (PICKLE)
20 CELLULAR TRANSPORT, TRANSPORT FACILITATION AND TRANSPORT ROUTES
20248_at At2g14670 gb|AAC69375.1| Sucrose transporter (sucrose-proton symporter), putative
18549_s_at At2g22950 gb|AAF18608.1| Potential calcium-transporting ATPase 7, plasma membrane-type
19487_at At2g25580 gb|AAD31361.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
17363_s_at At2g32830 dbj|BAA24280.1| Identical to inorganic phosphate transporter (PHT5)
17242_at At2g35540 gb|AAC36167.1| DnaJ domain-containing protein, contains Pfam profile PF00226: DnaJ domain
12389_at At1g78720 gb|AAC83037.1| Protein transport protein sec61 alpha subunit -related
18196_at At4g14820 emb|CAB10261.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
19255_at At4g20770 emb|CAB45843.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
16748_s_at At4g21300 emb|CAA17548.1| Pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats
15355_s_at At4g21560 emb|CAB36800.1| Expressed protein hypothetical protein YPL065w yeast, PIR2:S60925
70 SUBCELLULAR LOCALIZATION
18443_at At2g03060 gb|AAC32924.1| MADS-box protein
12528_at At2g22200 gb|AAD23620.1| AP2 domain transcription factor
12358_at At1g54610 gb|AAC64876.1| Similar to CRK1 protein GI:7671528 from [Beta vulgaris]
12389_at At1g78720 gb|AAC83037.1| Protein transport protein Sec61 alpha subunit -related
15486_at At4g01880 gb|AAD22650.1| Expressed protein
12282_at At5g44800 gb|AAC79140.1| Chromodomain-helicase-DNA-binding (CHD) protein family similar to chromatin remodeling factor CHD3 (PICKLE)
14 PROTEIN FATE (folding, modification, destination)
19487_at At2g25580 gb|AAD31361.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
12655_at At2g31780 gb|AAD32294.1| Ariadne protein from Drosophila -related
17242_at At2g35540 gb|AAC36167.1| DnaJ domain-containing protein, contains Pfam profile PF00226: DnaJ domain
19797_at At1g64030 gb|AAC27146.1| Serpin family similar to phloem serpin-1 [Cucurbita maxima] GI:9937311
12389_at At1g78720 gb|AAC83037.1| Protein transport protein sec61 alpha subunit -related
18408_s_at At4g03360 gb|AAD14465.1| Ubiquitin family contains INTERPRO:IPR000626 ubiquitin domain
18196_at At4g14820 emb|CAB10261.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
19255_at At4g20770 emb|CAB45843.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
16748_s_at At4g21300 emb|CAA17548.1| Pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats
32 CELL RESCUE, DEFENSE AND VIRULENCE
16175_g_at At2g29610 gb|AAC35234.1| F-box protein family contains Pfam profile PF00646: F-box domain
17242_at At2g35540 gb|AAC36167.1| DnaJ domain-containing protein, contains Pfam profile PF00226: DnaJ domain
14370_at At1g54550 gb|AAD25633.1| F-box protein family contains Pfam:PF00646 F-box domain
12358_at At1g54610 gb|AAC64876.1| Similar to CRK1 protein GI:7671528 from [Beta vulgaris]
16803_at At1g61230 gb|AAB71472.1| Jacalin lectin family similar to myrosinase-binding protein homolog
17294_at At4g19500 emb|CAA16927.2| Disease resistance protein (TIR-NBS-LRR class), putative
17306_at At5g35940 gb|AAB63636.1| Jacalin lectin family similar to myrosinase-binding protein homolog
42 BIOGENESIS OF CELLULAR COMPONENTS
19487_at At2g25580 gb|AAD31361.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
20031_at At4g14310 emb|CAB10210.1| Expressed protein, peroxisomal membrane protein-related
18196_at At4g14820 emb|CAB10261.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
19255_at At4g20770 emb|CAB45843.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
16748_s_at At4g21300 emb|CAA17548.1| Pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats
17733_at At4g28090 emb|CAB36778.1| Pectinesterase (pectin methylesterase), putative, similar to pollen-specific BP10 protein [SP|Q00624] [Brassica napus]
17586_at At5g16850 gb|AAD54777.1| Telomerase reverse transcriptase
12282_at At5g44800 gb|AAC79140.1| Chromodomain-helicase-DNA-binding (CHD) protein family similar to chromatin remodeling factor CHD3 (PICKLE)
01 METABOLISM
17817_at At2g23096 gb|AAC17826.1| Oxidoreductase -related temporary gene name assignment
18423_at At1g51260 gb|AAD30638.1| Acyl-CoA:1-acylglycerol-3-phosphate acyltransferase, putative
12358_at At1g54610 gb|AAC64876.1| Similar to CRK1 protein GI:7671528 from [Beta vulgaris]
13726_at At1g74800 gb|AAD55296.1| Galactosyltransferase family contains Pfam profile: PF01762 galactosyltransferase
19038_at At3g52160 emb|CAB41336.1| Beta-ketoacyl-CoA synthase family protein
17646_at At4g20080 emb|CAA16616.1| C2 domain-containing protein contains INTERPRO:IPR000008 C2 domain
14274_at At5g20980 emb|CAB38313.1| 5-Methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase - like protein
16 PROTEIN WITH BINDING FUNCTION OR COFACTOR REQUIREMENT (structural or catalytic)
12655_at At2g31780 gb|AAD32294.1| Ariadne protein from Drosophila-related
18510_at At1g60630 gb|AAB71975.1| Leucine rich repeat protein family, similar to receptor kinase GI:498278 from [Petunia integrifolia]
16881_at At1g69990 gb|AAB61113.1| Leucine-rich repeat transmembrane protein kinase, putative
17223_at At1g78980 gb|AAC17069.1| Leucine-rich repeat transmembrane protein kinase, putative
16801_s_at At4g29990 emb|CAB43834.1| Identical to light repressible receptor protein kinase
12282_at At5g44800 gb|AAC79140.1| Chromodomain-helicase-DNA-binding (CHD) protein family similar to chromatin remodeling factor CHD3 (PICKLE)
10 CELL CYCLE AND DNA PROCESSING
12655_at At2g31780 gb|AAD32294.1| Ariadne protein from DROSOPHILA -related
17242_at At2g35540 gb|AAC36167.1| DnaJ domain-containing protein, contains Pfam profile PF00226: DnaJ domain
12358_at At1g54610 gb|AAC64876.1| Similar to CRK1 protein GI:7671528 from [Beta vulgaris]
12282_at At5g44800 gb|AAC79140.1| Chromodomain-helicase-DNA-binding (CHD) protein family similar to chromatin remodeling factor CHD3 (PICKLE)
02 ENERGY
19487_at At2g25580 gb|AAD31361.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
18196_at At4g14820 emb|CAB10261.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
19255_at At4g20770 emb|CAB45843.1| Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
16748_s_at At4g21300 emb|CAA17548.1| Pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats
38 TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS
16879_at At2g05550 gb|AAD24652.1| non-LTR retroelement reverse transcriptase -related
15400_at At4g08110 gb|AAD27901.1| Expressed protein, CACTA-like transposase family (Ptta/En/Spm)
17201_at At4g13120 emb|CAB41922.1| Hypothetical protein
40 CELL FATE
12389_at At1g78720 gb|AAC83037.1| Protein transport protein sec61 alpha subunit -related
13058_s_at At4g17580 emb|CAB10538.2| Similar to SP|Q9LD45 Bax inhibitor-1 (BI-1) (AtBI-1)
41 DEVELOPMENT (systemic)
18443_at At2g03060 gb|AAC32924.1| MADS-box protein
12389_at At1g78720 gb|AAC83037.1| Protein transport protein sec61 alpha subunit -related
34 INTERACTION WITH THE CELLULAR ENVIRONMENT
12358_at At1g54610 gb|AAC64876.1| Similar to CRK1 protein GI:7671528 from [Beta vulgaris]
36 INTERACTION WITH THE ENVIRONMENT (Systemic)
12389_at At1g78720 gb|AAC83037.1| Protein transport protein sec61 alpha subunit -related
12 PROTEIN SYNTHESIS
16667_at At3g48960 emb|CAB51060.1| 60S ribosomal protein L13 (RPL13C)