From: Contribution of transcriptional regulation to natural variations in Arabidopsis
Functional category | ATH1 hits | Pr(F)-accessions | Pr(F)-Organs | Pr(F)-accessions: organs | Bonferroni corrected Pr(F)-accessions: organs | Description |
---|---|---|---|---|---|---|
41 DEVELOPMENT (systemic) | ||||||
18715_at | At1g14930 | 1.0285E-05 | 1.3523E-13 | 1.2253E-08 | 9.1998E-05 | Major latex protein (MLP)-related low similarity to major latex protein |
18229_at | At1g14940 | 5.4018E-07 | 3.5527E-15 | 3.3317E-10 | 2.5014E-06 | Major latex protein (MLP)-related low similarity to major latex protein |
18717_at | At1g14950 | 8.6683E-04 | 2.3537E-14 | 3.8173E-07 | 2.8661E-03 | Major latex protein (MLP)-related low similarity to major latex protein |
17893_at | At2g23110 | 2.2913E-06 | 1.7710E-10 | 3.0508E-07 | 2.2906E-03 | Late embryogenesis abundant proteins -related |
12731_f_at | At2g26960 | 1.1209E-09 | 4.2244E-09 | 1.6659E-09 | 1.2507E-05 | MYB family transcription factor |
20004_s_at | At2g35300 | 3.0731E-06 | 1.2479E-13 | 1.4412E-06 | 1.0820E-02 | Late embryogenesis abundant proteins -related identical to GB:X91917 |
13674_s_at | At2g36640 | 9.1097E-07 | 1.4619E-11 | 8.2287E-07 | 6.1781E-03 | Nearly identical to LEA protein in group 3 |
17038_s_at | At2g36640 | 6.4830E-06 | 1.4944E-10 | 5.8337E-06 | 4.3799E-02 | Nearly identical to LEA protein in group 3 |
16896_s_at | At2g41260 | 3.9707E-11 | 1.1213E-14 | 3.9237E-10 | 2.9459E-06 | Glycine-rich, identical to late-embryogenesis abundant M17 protein GI:3342551 |
19355_s_at | At2g41280 | 3.7790E-09 | 6.5988E-10 | 3.4337E-07 | 2.5780E-03 | Late embryogenesis abundant M10 protein identical to GB:AF076979 |
15747_at | At2g42560 | 5.1854E-08 | 6.4206E-12 | 3.2085E-07 | 2.4090E-03 | Late embryogenesis abundant (LEA) domain-containing protein |
15604_s_at | At3g15400 | 4.6444E-07 | 4.5835E-09 | 3.5477E-06 | 2.6636E-02 | Identical to anther development protein ATA20 GB:AAC50042 |
19918_at | At3g15670 | 3.7835E-08 | 1.5210E-14 | 4.4004E-08 | 3.3038E-04 | Similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) |
18872_at | At3g17520 | 4.2978E-10 | 1.1102E-16 | 2.5048E-09 | 1.8806E-05 | Low similarity to PIR|S04045|S04045 embryonic abundant protein D-29 |
17282_s_at | At3g51810 | 1.4069E-08 | 1.5599E-13 | 6.4057E-10 | 4.8094E-06 | Embryonic abundant protein AtEm1 |
20682_g_at | At4g26740 | 6.4621E-04 | 2.8866E-15 | 1.0571E-06 | 7.9364E-03 | Embryo-specific protein 1 (ATS1) putative Ca2+-binding EF-hand protein |
13675_s_at | At3g22500 | 8.1351E-08 | 7.9450E-09 | 7.7592E-07 | 5.8256E-03 | LEA protein, putative |
04 STORAGE PROTEIN | ||||||
18295_s_at | At1g03880 | 3.5027E-08 | 0.0000E+00 | 1.9892E-10 | 1.4935E-06 | 12S seed storage protein (CRB) |
13200_s_at | At1g03880 | 2.0300E-05 | 2.4425E-15 | 1.7983E-07 | 1.3502E-03 | 12S seed storage protein (CRB) |
20221_at | At1g03890 | 8.7822E-06 | 5.1070E-15 | 2.5720E-07 | 1.9311E-03 | Globulin (seed storage protein) family similar to Arabidopsis thaliana 12S seed storage proteins SP|P15455 |
20222_g_at | At1g03890 | 2.3617E-05 | 2.7756E-15 | 2.5729E-07 | 1.9317E-03 | globulin (seed storage protein) family similar to Arabidopsis thaliana 12S seed storage proteins SP|P15455 |
20535_s_at | At2g28490 | 2.4914E-03 | 1.1269E-13 | 3.8367E-06 | 2.8806E-02 | Cupin domain-containing protein similar to preproMP27-MP32 [Cucurbita cv. Kurokawa Amakuri] |
15983_s_at | At4g27140 | 3.1858E-04 | 1.4433E-15 | 2.6036E-07 | 1.9547E-03 | 2S seed storage protein 1 (NWMU1 - 2S albumin 1) identical to SP|P15457 |
15984_s_at | At4g27170 | 8.4937E-06 | 0.0000E+00 | 6.1932E-09 | 4.6498E-05 | 2S seed storage protein 4 (NWMU2-2S albumin 4) identical to SP|P15460 |
13449_at | At4g36700 | 1.5016E-05 | 2.9865E-14 | 3.3621E-06 | 2.5242E-02 | Cupin domain-containing protein low similarity to preproMP27-MP32 from Cucurbita cv. Kurokawa Amakuri |
16025_s_at | At4g28520 | 6.5162E-09 | 0.0000E+00 | 2.2615E-10 | 1.6980E-06 | 12S seed storage protein (cruciferin), putative |
16425_s_at | At5g44120 | 2.4424E-08 | 6.1062E-15 | 3.4512E-07 | 2.5912E-03 | 12S seed storage protein (CRA1) |
13201_at | At5g54740 | 3.4456E-08 | 0.0000E+00 | 1.8704E-11 | 1.4043E-07 | 2S seed storage protein family protein |
13194_at | At4g27160 | 1.0828E-06 | 5.7732E-15 | 2.4480E-07 | 1.8380E-03 | NWMU3 - 2S albumin 3 precursor, seed storage protein AT2S3 |
13198_i_at | At4g28520 | 4.1773E-07 | 4.8295E-14 | 8.3466E-08 | 6.2666E-04 | 12S cruciferin seed storage protein |
13199_r_at | At4g28520 | 9.8653E-08 | 1.0880E-14 | 1.8093E-08 | 1.3585E-04 | 12S cruciferin seed storage protein |
32 CELL RESCUE, DEFENSE AND VIRULENCE | ||||||
14789_at | At2g15010 | 1.0120E-04 | 1.2166E-12 | 4.2917E-06 | 3.2222E-02 | Similar to thionin [Arabidopsis thaliana] gi|1181533|gb|AAC41679 |
18715_at | At1g14930 | 1.0285E-05 | 1.3523E-13 | 1.2253E-08 | 9.1998E-05 | Low similarity to major latex protein {Papaver somniferum} |
18229_at | At1g14940 | 5.4018E-07 | 3.5527E-15 | 3.3317E-10 | 2.5014E-06 | Low similarity to major latex protein {Papaver somniferum} |
18717_at | At1g14950 | 8.6683E-04 | 2.3537E-14 | 3.8173E-07 | 2.8661E-03 | Low similarity to major latex protein {Papaver somniferum} |
20375_at | At1g48130 | 2.0800E-05 | 3.1086E-15 | 1.2134E-07 | 9.1102E-04 | Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana] |
18716_at | At1g75830 | 1.0527E-05 | 4.7479E-10 | 1.2692E-06 | 9.5295E-03 | Plant defensin protein, putative (PDF1.1) |
16450_s_at | At3g50980 | 1.1415E-05 | 7.6645E-12 | 8.6448E-07 | 6.4905E-03 | Dehydrin, putative similar to dehydrin Xero 1 |
17282_s_at | At3g51810 | 1.4069E-08 | 1.5599E-13 | 6.4057E-10 | 4.8094E-06 | Embryonic abundant protein AtEm1 |
16892_at | At5g45890 | 3.2112E-09 | 0.0000E+00 | 1.7785E-10 | 1.3353E-06 | Cysteine protease SAG12 identical to senescence-specific protein SAG12 |
18558_at | At2g21490 | 3.7353E-07 | 2.0317E-14 | 2.1270E-07 | 1.5969E-03 | Putative dehydrin |
17310_at | At3g51810 | 4.4370E-06 | 4.0301E-14 | 5.2274E-09 | 3.9248E-05 | Embryonic abundant protein AtEm1 |
01 METABOLISM | Â | Â | Â | Â | Â | Â |
18320_s_at | At1g02790 | 5.5345E-07 | 0.0000E+00 | 1.1637E-07 | 8.7372E-04 | Similar to polygalacturonase |
17316_at | At2g16730 | 8.3049E-09 | 1.0945E-12 | 1.0082E-06 | 7.5697E-03 | Glycosyl hydrolase family 35 (beta-galactosidase) |
19003_at | At2g25890 | 1.3232E-05 | 1.8763E-13 | 5.8363E-07 | 4.3819E-03 | Oleosin |
20375_at | At1g48130 | 2.0800E-05 | 3.1086E-15 | 1.2134E-07 | 9.1102E-04 | Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana] |
18991_s_at | At3g27660 | 1.6605E-04 | 3.1308E-14 | 2.4540E-06 | 1.8425E-02 | Identical to oleosin isoform GB:S71286 from [Arabidopsis thaliana] |
19435_at | At4g00240 | 3.9561E-08 | 2.8820E-06 | 4.0132E-07 | 3.0131E-03 | Phospholipase D -related |
16865_s_at | At3g57510 | 6.4423E-08 | 3.7925E-13 | 6.5117E-06 | 4.8890E-02 | Putative similar to polygalacturonase |
20412_s_at | At4g25140 | 3.9887E-06 | 4.4409E-16 | 1.5210E-07 | 1.1420E-03 | Oleosin |
12435_s_at | At4g34520 | 1.3485E-05 | 1.1102E-16 | 5.6989E-08 | 4.2788E-04 | Fatty acid elongase 1 (FAE1) identical to fatty acid elongase 1 [GI:881615] |
16575_s_at | At5g40420 | 2.6083E-08 | 0.0000E+00 | 7.9331E-09 | 5.9562E-05 | Oleosin |
20035_at | At5g44440 | 1.8623E-07 | 3.5083E-14 | 4.1535E-07 | 3.1184E-03 | FAD-linked oxidoreductase family similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) |
42 BIOGENESIS OF CELLULAR COMPONENTS | ||||||
18320_s_at | At1g02790 | 5.5345E-07 | 0.0000E+00 | 1.1637E-07 | 8.7372E-04 | Similar to polygalacturonase GI:288611 from [Zea mays] |
19003_at | At2g25890 | 1.3232E-05 | 1.8763E-13 | 5.8363E-07 | 4.3819E-03 | oleosin |
15604_s_at | At3g15400 | 4.6444E-07 | 4.5835E-09 | 3.5477E-06 | 2.6636E-02 | Identical to anther development protein ATA20 |
18716_at | At1g75830 | 1.0527E-05 | 4.7479E-10 | 1.2692E-06 | 9.5295E-03 | Plant defensin protein, putative (PDF1.1) |
18991_s_at | At3g27660 | 1.6605E-04 | 3.1308E-14 | 2.4540E-06 | 1.8425E-02 | Identical to oleosin isoform GB:S71286 from [Arabidopsis thaliana] |
16865_s_at | At3g57510 | 6.4423E-08 | 3.7925E-13 | 6.5117E-06 | 4.8890E-02 | Similar to polygalacturonase GI:288611 from [Zea mays] |
13243_r_at | At4g37990 | 2.8137E-07 | 4.7398E-09 | 9.4561E-07 | 7.0996E-03 | Mannitol dehydrogenase (ELI3-2), putative |
16575_s_at | At5g40420 | 2.6083E-08 | 0.0000E+00 | 7.9331E-09 | 5.9562E-05 | Oleosin |
70 SUBCELLULAR LOCALIZATION | ||||||
12085_at | At1g04560 | 7.4897E-04 | 2.7756E-15 | 2.3200E-07 | 1.7418E-03 | Expressed protein similar to GB:AAC37469 |
12731_f_at | At2g26960 | 1.1209E-09 | 4.2244E-09 | 1.6659E-09 | 1.2507E-05 | MYB family transcription factor |
17710_at | At2g28340 | 7.6288E-08 | 2.4759E-06 | 6.9175E-07 | 5.1936E-03 | GATA zinc finger protein and genefinder |
20375_at | At1g48130 | 2.0800E-05 | 3.1086E-15 | 1.2134E-07 | 9.1102E-04 | Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana] |
16892_at | At5g45890 | 3.2112E-09 | 0.0000E+00 | 1.7785E-10 | 1.3353E-06 | Cysteine protease SAG12 identical to senescence-specific protein SAG12 |
14 PROTEIN FATE (folding, modification, destination) | ||||||
14420_at | At2g31980 | 1.3121E-03 | 2.8566E-13 | 3.1987E-06 | 2.4016E-02 | Cysteine proteinase inhibitor B (cystatin B) -related |
17282_s_at | At3g51810 | 1.4069E-08 | 1.5599E-13 | 6.4057E-10 | 4.8094E-06 | Embryonic abundant protein AtEm1 |
20682_g_at | At4g26740 | 6.4621E-04 | 2.8866E-15 | 1.0571E-06 | 7.9364E-03 | Embryo-specific protein 1 (ATS1) putative Ca2+-binding EF-hand protein |
16892_at | At5g45890 | 3.2112E-09 | 0.0000E+00 | 1.7785E-10 | 1.3353E-06 | Cysteine protease SAG12 identical to senescence-specific protein SAG12 |
20681_at | At4g26740 | 1.0968E-05 | 8.7708E-15 | 3.7368E-06 | 2.8056E-02 | Embryo-specific protein 1 (ATS1) |
17310_at | At3g51810 | 4.4370E-06 | 4.0301E-14 | 5.2274E-09 | 3.9248E-05 | Embryonic abundant protein AtEm1 |
30 CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM | ||||||
18958_s_at | At3g15410 | 1.0215E-06 | 1.6373E-08 | 4.1125E-08 | 3.0876E-04 | Leucine rich repeat protein family contains leucine rich-repeat (LRR) domains |
19435_at | At4g00240 | 3.9561E-08 | 2.8820E-06 | 4.0132E-07 | 3.0131E-03 | Phospholipase D -related |
18958_s_at | At3g15410 | 1.0215E-06 | 1.6373E-08 | 4.1125E-08 | 3.0876E-04 | Leucine rich repeat protein family contains leucine rich-repeat (LRR) domains |
20682_g_at | At4g26740 | 6.4621E-04 | 2.8866E-15 | 1.0571E-06 | 7.9364E-03 | Embryo-specific protein 1 (ATS1) putative Ca2+-binding EF-hand protein |
20681_at | At4g26740 | 1.0968E-05 | 8.7708E-15 | 3.7368E-06 | 2.8056E-02 | Embryo-specific protein 1 (ATS1) |
11 TRANSCRIPTION | ||||||
12731_f_at | At2g26960 | 1.1209E-09 | 4.2244E-09 | 1.6659E-09 | 1.2507E-05 | MYB family transcription factor |
17710_at | At2g28340 | 7.6288E-08 | 2.4759E-06 | 6.9175E-07 | 5.1936E-03 | GATA zinc finger protein and genefinder |
20375_at | At1g48130 | 2.0800E-05 | 3.1086E-15 | 1.2134E-07 | 9.1102E-04 | Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana] |
16892_at | At5g45890 | 3.2112E-09 | 0.0000E+00 | 1.7785E-10 | 1.3353E-06 | Cysteine protease SAG12 identical to senescence-specific protein SAG12 |
02 ENERGY | ||||||
16892_at | At5g45890 | 3.2112E-09 | 0.0000E+00 | 1.7785E-10 | 1.3353E-06 | Cysteine protease SAG12 identical to senescence-specific protein SAG12 |
12 PROTEIN SYNTHESIS | ||||||
17871_at | At2g16360 | 9.2371E-07 | 9.4722E-08 | 8.4690E-09 | 6.3585E-05 | 40S ribosomal protein S25 (RPS25A) |
34 INTERACTION WITH THE CELLULAR ENVIRONMENT | ||||||
20375_at | At1g48130 | 2.0800E-05 | 3.1086E-15 | 1.2134E-07 | 9.1102E-04 | Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana] |
36 INTERACTION WITH THE ENVIRONMENT (systemic) | ||||||
20375_at | At1g48130 | 2.0800E-05 | 3.1086E-15 | 1.2134E-07 | 9.1102E-04 | peroxIredoxin identical to SP:O04005 from [Arabidopsis thaliana] |