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Table 5 Genes whose expression is affected by accession-by-organ interaction, identified through two-way ANOVA analysis

From: Contribution of transcriptional regulation to natural variations in Arabidopsis

Functional category ATH1 hits Pr(F)-accessions Pr(F)-Organs Pr(F)-accessions: organs Bonferroni corrected Pr(F)-accessions: organs Description
41 DEVELOPMENT (systemic)
18715_at At1g14930 1.0285E-05 1.3523E-13 1.2253E-08 9.1998E-05 Major latex protein (MLP)-related low similarity to major latex protein
18229_at At1g14940 5.4018E-07 3.5527E-15 3.3317E-10 2.5014E-06 Major latex protein (MLP)-related low similarity to major latex protein
18717_at At1g14950 8.6683E-04 2.3537E-14 3.8173E-07 2.8661E-03 Major latex protein (MLP)-related low similarity to major latex protein
17893_at At2g23110 2.2913E-06 1.7710E-10 3.0508E-07 2.2906E-03 Late embryogenesis abundant proteins -related
12731_f_at At2g26960 1.1209E-09 4.2244E-09 1.6659E-09 1.2507E-05 MYB family transcription factor
20004_s_at At2g35300 3.0731E-06 1.2479E-13 1.4412E-06 1.0820E-02 Late embryogenesis abundant proteins -related identical to GB:X91917
13674_s_at At2g36640 9.1097E-07 1.4619E-11 8.2287E-07 6.1781E-03 Nearly identical to LEA protein in group 3
17038_s_at At2g36640 6.4830E-06 1.4944E-10 5.8337E-06 4.3799E-02 Nearly identical to LEA protein in group 3
16896_s_at At2g41260 3.9707E-11 1.1213E-14 3.9237E-10 2.9459E-06 Glycine-rich, identical to late-embryogenesis abundant M17 protein GI:3342551
19355_s_at At2g41280 3.7790E-09 6.5988E-10 3.4337E-07 2.5780E-03 Late embryogenesis abundant M10 protein identical to GB:AF076979
15747_at At2g42560 5.1854E-08 6.4206E-12 3.2085E-07 2.4090E-03 Late embryogenesis abundant (LEA) domain-containing protein
15604_s_at At3g15400 4.6444E-07 4.5835E-09 3.5477E-06 2.6636E-02 Identical to anther development protein ATA20 GB:AAC50042
19918_at At3g15670 3.7835E-08 1.5210E-14 4.4004E-08 3.3038E-04 Similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76)
18872_at At3g17520 4.2978E-10 1.1102E-16 2.5048E-09 1.8806E-05 Low similarity to PIR|S04045|S04045 embryonic abundant protein D-29
17282_s_at At3g51810 1.4069E-08 1.5599E-13 6.4057E-10 4.8094E-06 Embryonic abundant protein AtEm1
20682_g_at At4g26740 6.4621E-04 2.8866E-15 1.0571E-06 7.9364E-03 Embryo-specific protein 1 (ATS1) putative Ca2+-binding EF-hand protein
13675_s_at At3g22500 8.1351E-08 7.9450E-09 7.7592E-07 5.8256E-03 LEA protein, putative
04 STORAGE PROTEIN
18295_s_at At1g03880 3.5027E-08 0.0000E+00 1.9892E-10 1.4935E-06 12S seed storage protein (CRB)
13200_s_at At1g03880 2.0300E-05 2.4425E-15 1.7983E-07 1.3502E-03 12S seed storage protein (CRB)
20221_at At1g03890 8.7822E-06 5.1070E-15 2.5720E-07 1.9311E-03 Globulin (seed storage protein) family similar to Arabidopsis thaliana 12S seed storage proteins SP|P15455
20222_g_at At1g03890 2.3617E-05 2.7756E-15 2.5729E-07 1.9317E-03 globulin (seed storage protein) family similar to Arabidopsis thaliana 12S seed storage proteins SP|P15455
20535_s_at At2g28490 2.4914E-03 1.1269E-13 3.8367E-06 2.8806E-02 Cupin domain-containing protein similar to preproMP27-MP32 [Cucurbita cv. Kurokawa Amakuri]
15983_s_at At4g27140 3.1858E-04 1.4433E-15 2.6036E-07 1.9547E-03 2S seed storage protein 1 (NWMU1 - 2S albumin 1) identical to SP|P15457
15984_s_at At4g27170 8.4937E-06 0.0000E+00 6.1932E-09 4.6498E-05 2S seed storage protein 4 (NWMU2-2S albumin 4) identical to SP|P15460
13449_at At4g36700 1.5016E-05 2.9865E-14 3.3621E-06 2.5242E-02 Cupin domain-containing protein low similarity to preproMP27-MP32 from Cucurbita cv. Kurokawa Amakuri
16025_s_at At4g28520 6.5162E-09 0.0000E+00 2.2615E-10 1.6980E-06 12S seed storage protein (cruciferin), putative
16425_s_at At5g44120 2.4424E-08 6.1062E-15 3.4512E-07 2.5912E-03 12S seed storage protein (CRA1)
13201_at At5g54740 3.4456E-08 0.0000E+00 1.8704E-11 1.4043E-07 2S seed storage protein family protein
13194_at At4g27160 1.0828E-06 5.7732E-15 2.4480E-07 1.8380E-03 NWMU3 - 2S albumin 3 precursor, seed storage protein AT2S3
13198_i_at At4g28520 4.1773E-07 4.8295E-14 8.3466E-08 6.2666E-04 12S cruciferin seed storage protein
13199_r_at At4g28520 9.8653E-08 1.0880E-14 1.8093E-08 1.3585E-04 12S cruciferin seed storage protein
32 CELL RESCUE, DEFENSE AND VIRULENCE
14789_at At2g15010 1.0120E-04 1.2166E-12 4.2917E-06 3.2222E-02 Similar to thionin [Arabidopsis thaliana] gi|1181533|gb|AAC41679
18715_at At1g14930 1.0285E-05 1.3523E-13 1.2253E-08 9.1998E-05 Low similarity to major latex protein {Papaver somniferum}
18229_at At1g14940 5.4018E-07 3.5527E-15 3.3317E-10 2.5014E-06 Low similarity to major latex protein {Papaver somniferum}
18717_at At1g14950 8.6683E-04 2.3537E-14 3.8173E-07 2.8661E-03 Low similarity to major latex protein {Papaver somniferum}
20375_at At1g48130 2.0800E-05 3.1086E-15 1.2134E-07 9.1102E-04 Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana]
18716_at At1g75830 1.0527E-05 4.7479E-10 1.2692E-06 9.5295E-03 Plant defensin protein, putative (PDF1.1)
16450_s_at At3g50980 1.1415E-05 7.6645E-12 8.6448E-07 6.4905E-03 Dehydrin, putative similar to dehydrin Xero 1
17282_s_at At3g51810 1.4069E-08 1.5599E-13 6.4057E-10 4.8094E-06 Embryonic abundant protein AtEm1
16892_at At5g45890 3.2112E-09 0.0000E+00 1.7785E-10 1.3353E-06 Cysteine protease SAG12 identical to senescence-specific protein SAG12
18558_at At2g21490 3.7353E-07 2.0317E-14 2.1270E-07 1.5969E-03 Putative dehydrin
17310_at At3g51810 4.4370E-06 4.0301E-14 5.2274E-09 3.9248E-05 Embryonic abundant protein AtEm1
01 METABOLISM       
18320_s_at At1g02790 5.5345E-07 0.0000E+00 1.1637E-07 8.7372E-04 Similar to polygalacturonase
17316_at At2g16730 8.3049E-09 1.0945E-12 1.0082E-06 7.5697E-03 Glycosyl hydrolase family 35 (beta-galactosidase)
19003_at At2g25890 1.3232E-05 1.8763E-13 5.8363E-07 4.3819E-03 Oleosin
20375_at At1g48130 2.0800E-05 3.1086E-15 1.2134E-07 9.1102E-04 Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana]
18991_s_at At3g27660 1.6605E-04 3.1308E-14 2.4540E-06 1.8425E-02 Identical to oleosin isoform GB:S71286 from [Arabidopsis thaliana]
19435_at At4g00240 3.9561E-08 2.8820E-06 4.0132E-07 3.0131E-03 Phospholipase D -related
16865_s_at At3g57510 6.4423E-08 3.7925E-13 6.5117E-06 4.8890E-02 Putative similar to polygalacturonase
20412_s_at At4g25140 3.9887E-06 4.4409E-16 1.5210E-07 1.1420E-03 Oleosin
12435_s_at At4g34520 1.3485E-05 1.1102E-16 5.6989E-08 4.2788E-04 Fatty acid elongase 1 (FAE1) identical to fatty acid elongase 1 [GI:881615]
16575_s_at At5g40420 2.6083E-08 0.0000E+00 7.9331E-09 5.9562E-05 Oleosin
20035_at At5g44440 1.8623E-07 3.5083E-14 4.1535E-07 3.1184E-03 FAD-linked oxidoreductase family similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE)
42 BIOGENESIS OF CELLULAR COMPONENTS
18320_s_at At1g02790 5.5345E-07 0.0000E+00 1.1637E-07 8.7372E-04 Similar to polygalacturonase GI:288611 from [Zea mays]
19003_at At2g25890 1.3232E-05 1.8763E-13 5.8363E-07 4.3819E-03 oleosin
15604_s_at At3g15400 4.6444E-07 4.5835E-09 3.5477E-06 2.6636E-02 Identical to anther development protein ATA20
18716_at At1g75830 1.0527E-05 4.7479E-10 1.2692E-06 9.5295E-03 Plant defensin protein, putative (PDF1.1)
18991_s_at At3g27660 1.6605E-04 3.1308E-14 2.4540E-06 1.8425E-02 Identical to oleosin isoform GB:S71286 from [Arabidopsis thaliana]
16865_s_at At3g57510 6.4423E-08 3.7925E-13 6.5117E-06 4.8890E-02 Similar to polygalacturonase GI:288611 from [Zea mays]
13243_r_at At4g37990 2.8137E-07 4.7398E-09 9.4561E-07 7.0996E-03 Mannitol dehydrogenase (ELI3-2), putative
16575_s_at At5g40420 2.6083E-08 0.0000E+00 7.9331E-09 5.9562E-05 Oleosin
70 SUBCELLULAR LOCALIZATION
12085_at At1g04560 7.4897E-04 2.7756E-15 2.3200E-07 1.7418E-03 Expressed protein similar to GB:AAC37469
12731_f_at At2g26960 1.1209E-09 4.2244E-09 1.6659E-09 1.2507E-05 MYB family transcription factor
17710_at At2g28340 7.6288E-08 2.4759E-06 6.9175E-07 5.1936E-03 GATA zinc finger protein and genefinder
20375_at At1g48130 2.0800E-05 3.1086E-15 1.2134E-07 9.1102E-04 Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana]
16892_at At5g45890 3.2112E-09 0.0000E+00 1.7785E-10 1.3353E-06 Cysteine protease SAG12 identical to senescence-specific protein SAG12
14 PROTEIN FATE (folding, modification, destination)
14420_at At2g31980 1.3121E-03 2.8566E-13 3.1987E-06 2.4016E-02 Cysteine proteinase inhibitor B (cystatin B) -related
17282_s_at At3g51810 1.4069E-08 1.5599E-13 6.4057E-10 4.8094E-06 Embryonic abundant protein AtEm1
20682_g_at At4g26740 6.4621E-04 2.8866E-15 1.0571E-06 7.9364E-03 Embryo-specific protein 1 (ATS1) putative Ca2+-binding EF-hand protein
16892_at At5g45890 3.2112E-09 0.0000E+00 1.7785E-10 1.3353E-06 Cysteine protease SAG12 identical to senescence-specific protein SAG12
20681_at At4g26740 1.0968E-05 8.7708E-15 3.7368E-06 2.8056E-02 Embryo-specific protein 1 (ATS1)
17310_at At3g51810 4.4370E-06 4.0301E-14 5.2274E-09 3.9248E-05 Embryonic abundant protein AtEm1
30 CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM
18958_s_at At3g15410 1.0215E-06 1.6373E-08 4.1125E-08 3.0876E-04 Leucine rich repeat protein family contains leucine rich-repeat (LRR) domains
19435_at At4g00240 3.9561E-08 2.8820E-06 4.0132E-07 3.0131E-03 Phospholipase D -related
18958_s_at At3g15410 1.0215E-06 1.6373E-08 4.1125E-08 3.0876E-04 Leucine rich repeat protein family contains leucine rich-repeat (LRR) domains
20682_g_at At4g26740 6.4621E-04 2.8866E-15 1.0571E-06 7.9364E-03 Embryo-specific protein 1 (ATS1) putative Ca2+-binding EF-hand protein
20681_at At4g26740 1.0968E-05 8.7708E-15 3.7368E-06 2.8056E-02 Embryo-specific protein 1 (ATS1)
11 TRANSCRIPTION
12731_f_at At2g26960 1.1209E-09 4.2244E-09 1.6659E-09 1.2507E-05 MYB family transcription factor
17710_at At2g28340 7.6288E-08 2.4759E-06 6.9175E-07 5.1936E-03 GATA zinc finger protein and genefinder
20375_at At1g48130 2.0800E-05 3.1086E-15 1.2134E-07 9.1102E-04 Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana]
16892_at At5g45890 3.2112E-09 0.0000E+00 1.7785E-10 1.3353E-06 Cysteine protease SAG12 identical to senescence-specific protein SAG12
02 ENERGY
16892_at At5g45890 3.2112E-09 0.0000E+00 1.7785E-10 1.3353E-06 Cysteine protease SAG12 identical to senescence-specific protein SAG12
12 PROTEIN SYNTHESIS
17871_at At2g16360 9.2371E-07 9.4722E-08 8.4690E-09 6.3585E-05 40S ribosomal protein S25 (RPS25A)
34 INTERACTION WITH THE CELLULAR ENVIRONMENT
20375_at At1g48130 2.0800E-05 3.1086E-15 1.2134E-07 9.1102E-04 Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana]
36 INTERACTION WITH THE ENVIRONMENT (systemic)
20375_at At1g48130 2.0800E-05 3.1086E-15 1.2134E-07 9.1102E-04 peroxIredoxin identical to SP:O04005 from [Arabidopsis thaliana]