Table 4 Genes whose expression is different in leaves of the five accessions by one-way ANOVA analysis
From: Contribution of transcriptional regulation to natural variations in Arabidopsis
Functional category | ATH1 hits | rawp | Bonferroni correction | GenBank ID | Description |
|---|---|---|---|---|---|
01 METABOLISM | |||||
17946_s_at | At1g03410 | 2.84132E-06 | 0.0213326 | gb|AAB97721.1| | 2-Oxoglutarate-dependent dioxygenase, putative |
19689_at | At5g24140 | 7.0739E-07 | 0.0053111 | emb|CAA06771.1| | Squalene monooxygenase 2 (squalene epoxidase 2) (SQP2) (SE2) |
12277_at | At1g47600 | 6.47203E-07 | 0.0048592 | gb|AAD46026.1| | Glycosyl hydrolase family 1, similar to thioglucosidase |
18836_at | At2g24710 | 5.09671E-06 | 0.0382661 | gb|AAD26894.1| | Plant glutamate receptor family (GLR2.3) |
17620_s_at | At2g42990 | 3.79611E-06 | 0.0285012 | gb|AAD21711.1| | GDSL-motif lipase/hydrolase protein similar to family II lipase EXL3 |
20514_i_at | At2g15370 | 1.35384E-08 | 0.0001016 | gb|AAD22287.1| | Similar to xyloglucan fucosyltransferase |
02 ENERGY | Â | Â | Â | Â | Â |
12277_at | At1g47600 | 6.47203E-07 | 0.0048592 | gb|AAD46026.1| | Glycosyl hydrolase family 1, similar to thioglucosidase |
10 CELL CYCLE AND DNA PROCESSING | |||||
18830_at | At2g32790 | 1.27302E-06 | 0.0095579 | gb|AAC04484.1| | Ubiquitin-conjugating enzyme |
15785_g_at | At1g08840 | 2.79162E-06 | 0.0209595 | gb|AAB70418.1| | Hypothetical protein gene overlaps Sp6 end of F7G19 |
11 TRANSCRIPTION | Â | Â | Â | Â | Â |
12869_s_at | At4g11880 | 3.45683E-06 | 0.0259539 | gb|AAC49082.1| | MADS-box protein AGL14 |
16072_s_at | At5g65790 | 2.97265E-06 | 0.0223187 | gb|AAC83623.1| | Identical to putative transcription factor (MYB68) |
13575_at | At4g03430 | 6.50883E-06 | 0.0488683 | gb|AAD11585.1| | Similar to yeast pre-mRNA splicing factors |
20254_at | At2g22390 | 2.41214E-06 | 0.0181104 | gb|AAD22360.1| | Â |
12366_s_at | At4g11880 | 2.5787E-06 | 0.0193608 | emb|CAB44326.1| | MADS-box protein AGL14 |
14885_at | At4g21340 | 2.22259E-06 | 0.0166872 | emb|CAA20199.1| | Expressed protein, putative bHLH transcription factor (bHLH103) |
18830_at | At2g32790 | 1.27302E-06 | 0.0095579 | gb|AAC04484.1| | Ubiquitin-conjugating enzyme |
19244_s_at | At2g04230 | 2.84687E-06 | 0.0213743 | gb|AAD27915.1| | F-box protein family, contains F-box domain |
19279_i_at | At4g21040 | 7.07742E-07 | 0.0053137 | emb|CAB45899.1| | Dof zinc finger protein, finger protein rolB |
13306_at | At2g41070 | 4.38217E-06 | 0.0329013 | gb|AAD12004.1| | bZIP family transcription factor, contains a bZIP transcription factor basic domain signature |
13343_at | At1g34310 | 4.60448E-08 | 0.0003457 | gb|AAD39615.1| | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
15224_at | At1g61540 | 8.21522E-08 | 0.0006168 | gb|AAD25554.1| | Kelch repeat containing F-box protein family low similarity to SKP1 interacting partner 6 |
15227_at | At2g01280 | 5.89076E-06 | 0.0442278 | gb|AAD14528.1| | Transcription factor -related, putative transcription factor IIIB 70 KD subunit (TFIIIB) |
16263_at | At2g02320 | 3.12005E-06 | 0.0234253 | gb|AAC78515.1| | F-box protein (SKP1 interacting partner 3-related) |
17145_at | At1g10110 | 6.9462E-08 | 0.0005215 | gb|AAC34337.1| | Contains Pfam PF00646: F-box domain; similar to F-box protein family, AtFBX7 |
13863_at | At2g21470 | 9.36899E-07 | 0.0070342 | gb|AAD23691.1| | Nearly identical to SUMO activating enzyme 2 (SAE2) |
12599_at | At2g29910 | 2.33543E-10 | 0.0000018 | gb|AAD23631.1| | F-box protein family contains F-box domain Pfam:PF00646 |
12913_at | At4g32880 | 1.90072E-06 | 0.0142706 | emb|CAA90703.1| | Identical to HD-zip transcription factor (athb-8) |
13216_s_at | At1g26310 | 8.05827E-07 | 0.0060501 | gb|AAA64789.1| | Floral regulatory gene CAULIFLOWER |
12863_r_at | At4g18960 | 1.05463E-06 | 0.0079181 | emb|X53579.1| | Floral homeotic protein agamous (AGAMOUS) |
14 PROTEIN FATE (folding, modification, destination) | |||||
20254_at | At2g22390 | 2.41214E-06 | 0.0181104 | gb|AAD22360.1| | Pseudogene, putative GTP-binding protein |
18830_at | At2g32790 | 1.27302E-06 | 0.0095579 | gb|AAC04484.1| | Ubiquitin-conjugating enzyme |
13863_at | At2g21470 | 9.36899E-07 | 0.0070342 | gb|AAD23691.1| | Nearly identical to SUMO activating enzyme 2 (SAE2) |
16 PROTEIN WITH BINDING FUNCTION OR COFACTOR REQUIREMENT (structural or catalytic) | |||||
20254_at | At2g22390 | 2.41214E-06 | 0.0181104 | gb|AAD22360.1| | Â |
18836_at | At2g24710 | 5.09671E-06 | 0.0382661 | gb|AAD26894.1| | Plant glutamate receptor family (GLR2.3) |
16262_at | At2g46850 | 4.75288E-06 | 0.0356846 | gb|AAC34215.2| | Ser/Thr protein kinase -related |
20 CELLULAR TRANSPORT, TRANSPORT FACILITATION AND TRANSPORT ROUTES | |||||
20254_at | At2g22390 | 2.41214E-06 | 0.0181104 | gb|AAD22360.1| | Pseudogene, putative GTP-binding protein |
18830_at | At2g32790 | 1.27302E-06 | 0.0095579 | gb|AAC04484.1| | Ubiquitin-conjugating enzyme |
18836_at | At2g24710 | 5.09671E-06 | 0.0382661 | gb|AAD26894.1| | Plant glutamate receptor family (GLR2.3) |
17618_at | At2g31910 | 3.44193E-06 | 0.0258420 | gb|AAD32281.1| | Similar to monovalent cation:proton antiporter family 2 |
30 CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM | |||||
20254_at | At2g22390 | 2.41214E-06 | 0.0181104 | gb|AAD22360.1| | Pseudogene, putative GTP-binding protein |
16816_at | At1g19230 | 5.65137E-06 | 0.0424305 | gb|AAC39478.1| | Respiratory burst oxidase protein E (NADPH oxidase) (RbohE) |
18836_at | At2g24710 | 5.09671E-06 | 0.0382661 | gb|AAD26894.1| | Plant glutamate receptor family (GLR2.3) |
19311_g_at | At2g41210 | 1.643E-06 | 0.0123356 | gb|AAC78530.2| | Phosphatidylinositol-4-phosphate 5-kinase -related |
13343_at | At1g34310 | 4.60448E-08 | 0.0003457 | gb|AAD39615.1| | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
15787_s_at | At1g09090 | 3.64297E-07 | 0.0027351 | gb|AAB70399.1| | Respiratory burst oxidase protein B (NADPH oxidase) (RbohB) |
16262_at | At2g46850 | 4.75288E-06 | 0.0356846 | gb|AAC34215.2| | Ser/Thr protein kinase -related |
32 CELL RESCUE, DEFENSE AND VIRULENCE | |||||
20254_at | At2g22390 | 2.41214E-06 | 0.0181104 | gb|AAD22360.1| | Pseudogene, putative GTP-binding protein |
12111_s_at | At4g19240 | 3.30499E-07 | 0.0024814 | emb|CAA18611.1| | Expressed protein |
12258_s_at | At4g14370 | 6.60533E-06 | 0.0495928 | emb|CAB10216.1| | Disease resistance protein (TIR-NBS-LRR class) |
12277_at | At1g47600 | 6.47203E-07 | 0.0048592 | gb|AAD46026.1| | Glycosyl hydrolase family 1, similar to thioglucosidase |
12956_i_at | At1g05170 | 3.64708E-06 | 0.0273823 | gb|AAB71461.1| | Galactosyltransferase family |
16375_at | At1g54480 | 6.28683E-06 | 0.0472015 | gb|AAD25626.1| | Leucine rich repeat protein family contains leucine rich-repeat (LRR) domains |
16816_at | At1g19230 | 5.65137E-06 | 0.0424305 | gb|AAC39478.1| | Respiratory burst oxidase protein E (NADPH oxidase) (RbohE) |
18830_at | At2g32790 | 1.27302E-06 | 0.0095579 | gb|AAC04484.1| | Ubiquitin-conjugating enzyme |
19244_s_at | At2g04230 | 2.84687E-06 | 0.0213743 | gb|AAD27915.1| | F-box protein family, contains F-box domain |
15224_at | At1g61540 | 8.21522E-08 | 0.0006168 | gb|AAD25554.1| | Kelch repeat containing F-box protein family low similarity to SKP1 interacting partner 6 |
15787_s_at | At1g09090 | 3.64297E-07 | 0.0027351 | gb|AAB70399.1| | Respiratory burst oxidase protein B (NADPH oxidase) (RbohB) |
16263_at | At2g02320 | 3.12005E-06 | 0.0234253 | gb|AAC78515.1| | F-box protein (SKP1 interacting partner 3-related) |
17145_at | At1g10110 | 6.9462E-08 | 0.0005215 | gb|AAC34337.1| | Contains Pfam PF00646: F-box domain; similar to F-box protein family, AtFBX7 |
12599_at | At2g29910 | 2.33543E-10 | 0.0000018 | gb|AAD23631.1| | F-box protein family contains F-box domain Pfam:PF00646 |
34 INTERACTION WITH THE CELLULAR ENVIRONMENT | |||||
16816_at | At1g19230 | 5.65137E-06 | 0.0424305 | gb|AAC39478.1| | Respiratory burst oxidase protein E (NADPH oxidase) (RbohE) |
18830_at | At2g32790 | 1.27302E-06 | 0.0095579 | gb|AAC04484.1| | Ubiquitin-conjugating enzyme |
15787_s_at | At1g09090 | 3.64297E-07 | 0.0027351 | gb|AAB70399.1| | Respiratory burst oxidase protein B (NADPH oxidase) (RbohB) |
36 INTERACTION WITH THE ENVIRONMENT (systemic) | |||||
17946_s_at | At1g03410 | 2.84132E-06 | 0.0213326 | gb|AAB97721.1| | 2-Oxoglutarate-dependent dioxygenase, putative |
38 TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS | |||||
16731_at | At2g11690 | 1.06284E-06 | 0.0079798 | gb|AAD28679.1| | Pseudogene |
18340_at | At4g07700 | 2.79501E-06 | 0.0209849 | gb|AAD29786.1| | Athila transposon protein -related |
40 CELL FATE | |||||
18830_at | At2g32790 | 1.27302E-06 | 0.0095579 | gb|AAC04484.1| | Ubiquitin-conjugating enzyme |
41 DEVELOPMENT (systemic) | |||||
17677_at | At1g03910 | 1.54447E-06 | 0.0115959 | gb|AAD10685.1| | Hypothetical protein |
13216_s_at | At1g26310 | 8.05827E-07 | 0.0060501 | gb|AAA64789.1| | Floral regulatory gene CAULIFLOWER |
12863_r_at | At4g18960 | 1.05463E-06 | 0.0079181 | emb|X53579.1| | Floral homeotic protein agamous (AGAMOUS) |
42 BIOGENESIS OF CELLULAR COMPONENTS | |||||
20254_at | At2g22390 | 2.41214E-06 | 0.0181104 | gb|AAD22360.1| | Pseudogene, putative GTP-binding protein |
18830_at | At2g32790 | 1.27302E-06 | 0.0095579 | gb|AAC04484.1| | Ubiquitin-conjugating enzyme |
13343_at | At1g34310 | 4.60448E-08 | 0.0003457 | gb|AAD39615.1| | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
43 CELL TYPE DIFFERENTIATION | |||||
20254_at | At2g22390 | 2.41214E-06 | 0.0181104 | gb|AAD22360.1| | Pseudogene, putative GTP-binding protein |
18830_at | At2g32790 | 1.27302E-06 | 0.0095579 | gb|AAC04484.1| | Ubiquitin-conjugating enzyme |
70 SUBCELLULAR LOCALIZATION | |||||
19689_at | At5g24140 | 7.0739E-07 | 0.0053111 | emb|CAA06771.1| | Squalene monooxygenase 2 (squalene epoxidase 2) (SQP2) (SE2) |
20254_at | At2g22390 | 2.41214E-06 | 0.0181104 | gb|AAD22360.1| | Pseudogene, putative GTP-binding protein |
18830_at | At2g32790 | 1.27302E-06 | 0.0095579 | gb|AAC04484.1| | Ubiquitin-conjugating enzyme |
18836_at | At2g24710 | 5.09671E-06 | 0.0382661 | gb|AAD26894.1| | Plant glutamate receptor family (GLR2.3) |
13343_at | At1g34310 | 4.60448E-08 | 0.0003457 | gb|AAD39615.1| | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
13863_at | At2g21470 | 9.36899E-07 | 0.0070342 | gb|AAD23691.1| | Nearly identical to SUMO activating enzyme 2 (SAE2) |
15785_g_at | At1g08840 | 2.79162E-06 | 0.0209595 | gb|AAB70418.1| | Hypothetical protein gene overlaps Sp6 end of F7G19 |
13216_s_at | At1g26310 | 8.05827E-07 | 0.0060501 | gb|AAA64789.1| | Floral regulatory gene CAULIFLOWER |
14356_at | At5g59370 | 3.6446E-08 | 0.0002736 | gb|AAB39403.1| | Identical to SP|P53494 Actin 4 |
12863_r_at | At4g18960 | 1.05463E-06 | 0.0079181 | emb|X53579.1| | Floral homeotic protein agamous (AGAMOUS) |
No hits to TIGR gene prediction | |||||
20512_at | 4.2379E-07 | 0.0031818 | gb|AC002336.3| | Arabidopsis thaliana chromosome 2 clone T2P4 map CIC10A06, complete | Â |
18049_s_at | 5.37206E-07 | 0.0040333 | emb|AJ132404.1| | Arabidopsis thaliana anti-sense transcript, AKL kinase-like gene | Â |