Skip to main content

Table 1 Quantitative RT-PCR confirmation of GeneChip Microarray data for genes 13903_at (At3g54050) and 17392_s_at (At3g53260) in Col-0 and C24

From: Contribution of transcriptional regulation to natural variations in Arabidopsis

Samples 13903_at 17392_s_at
  log2(rRHI) log2(nRHI) Taqman log2(rRHI) log2(nRHI) Taqman
Col-0-4 day seedlings 10.11940591 0.911529477 1.348 ± 0.262 10.38351776 0.658285681 0.362 ± 0.024
Col-0-2 week leaf 11.80337083 2.595494397 4.652 ± 0.389 10.56878747 0.84355539 0.299 ± 0.050
Col-0-11 week leaf 10.77324577 1.565369327 1.415 ± 0.336 10.33789612 0.612664042 0.163 ± 0.052
Col-0-2 week root 7.674725423 -1.533151014 0.134 ± 0.014 11.26384894 1.538616864 1.313 ± 0.324
Col-0-5 week root 7.873250697 -1.334625741 0.590 ± 0.064 10.99787749 1.272645415 0.648 ± 0.246
Col-0-influorescence 10.09145865 0.883582211 1.320 ± 0.247 11.01034472 1.285112643 0.519 ± 0.104
Col-0-flower 10.42134176 1.213465325 2.093 ± 0.658 10.62442631 0.899194238 0.263 ± 0.053
Col-0-young siliques 10.65287316 1.444996723 1.999 ± 2.885 10.57630495 0.851072873 0.430 ± 0.197
Col-0-mature siliques 9.475076913 0.267200476 1.432 ± 2.345 10.80990555 1.084673476 0.473 ± 0.113
C24-4 day seedlings 10.90593269 1.883371001 3.690 ± 0.482 10.20742445 0.596353845 0.321 ± 0.059
C24-2 week leaf 12.29789156 3.275329874 6.819 ± 3.507 10.65702025 1.04594965 0.299 ± 0.044
C24-11 week leaf 12.09006973 3.067508045 6.073 ± 1.283 9.19787898 -0.413191622 0.071 ± 0.037
C24-2 week root 7.550943148 -1.471618541 0.069 ± 0.022 10.89199181 1.280921209 0.790 ± 0.133
C24-5 week root 7.945743693 -1.076817996 0.317 ± 0.087 11.16598953 1.554918929 1.122 ± 0.324
C24-influorescence 10.72350042 1.700938727 2.397 ± 0.304 11.10540542 1.494334819 0.743 ± 0.105
C24-flower 10.71423996 1.691678266 1.054 ± 0.167 9.761854806 0.150784204 0.153 ± 0.048
C24-young siliques 11.01401689 1.991455197 1.885 ± 0.726 10.61478826 1.00371766 0.365 ± 0.058
C24-mature siliques 11.21144986 2.188888168 3.808 ± 0.569 11.24013223 1.629061624 1.002 ± 0.151
Correlation with log2 (Taqman assay) 0.925 0.933   0.801 0.821  
  1. gDHI for 13903_at is 591.35 and 520.07 for Col-0 and C24, respectively. gDHI for 17392_s_at is 846.42 and 782.02 for Col-0 and C24, respectively.