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Table 5 Examples of NAT pairs with MPSS matches on both strands

From: Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana

ID Strand Libraries
   CAF INF LEF ROF SIF AP1 AP3 AGM INS ROS SAP S04 S52 LES
Pair A                
At1g09750 + N N N N N 9 N 0 N 1 N N N 1
At1g09760 - 70 39 32 46 30 240 125 139 208 170 56 48 48 45
Pair B                
At1g72060 + 5 N 31 2 N N N N N 2 N 1 74 79
At1g72070 - 0 N N 1 N N N N N N 8 N N N
  1. Distinct expression of sense and antisense transcripts of NAT pair A was observed in all but one library. In the library where both transcripts of pair A were expressed, the abundance of one transcript was significantly higher than the other. For NAT pair B, the sense and antisense transcripts were expressed differentially in different libraries. Libraries in which both transcripts of a NAT pairs were expressed are shown in bold; libraries in which transcripts of only one gene of a NAT pairs were expressed are shown in italics. Abbreviations for libraries: CAF, callus - actively growing, classic MPSS; INF, infloresence - mixed stage, immature buds, classic MPSS; LEF, leaves - 21 day, untreated, classic MPSS; ROF, root - 21 day, untreated, classic MPSS; SIF, silique - 24-48 h post-fertilization, classic MPSS; AP1, ap1-10 infloresence - mixed stage, immature buds; AP3, ap3-6 infloresence - mixed stage, immature buds; AGM, agamous infloresence - mixed stage, immature buds; INS, infloresence - mixed stage, immature buds; ROS, root - 21 day, untreated; SAP, sup/ap1 infloresence - mixed stage, immature buds; S04, leaves, 4 h after salicylic acid treatment; S52, leaves, 52 h after salicylic acid treatment; LES, leaves - 21 day, untreated.