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Table 3 Splicing pattern and coding potential of Arabidopsis full-length cDNAs and annotated genes

From: Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana

 

UniGene cDNAs

RIKEN cDNAs

The Arabidopsis genome

Total transcripts

20,683

13,181

29,993

Number of transcripts with perfect genome match

17,814

12,877

29,993

Number of transcripts with ORFs

16,621

12,544

26,207

Number of non-spliced transcripts with ORFs

2,534

1,555

4,722

Number of transcripts without ORFs

1,193

333

3,786

Number of non-spliced transcripts without ORFs

466

130

3,786

  1. The splicing pattern of each transcript was obtained by aligning its corresponding cDNA sequences to the Arabidopsis genome using sim4. The coding potential of the genomic sequence of each transcript was examined by GeneScan.