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Table 1 The 3' codon context of CUG

From: Comparative context analysis of codon pairs on an ORFeome scale

3' Codon

Residual

3' Codon

Residual

3' Codon

Residual

3' Codon

Residual

AAA

7.436

ACG

0.644

UCU

-10.007

CCA

-2.438

AAG

1.927

CGU

-1.809

CUU

1.167

CCG

2.895

AAU

0.397

CGC

2.981

CUC

2.18

CAU

2.026

AAC

2.037

CGA

8.258

CUA

5.258

CAC

2.642

ACU

-6.947

CGG

5.404

CUG

6.774

CAA

4.049

ACC

-5.239

ACG

-4.726

CCU

-1.769

CAG

7.105

ACA

-5.12

AGG

-0.666

CCC

8.894

UAA

0.22

  1. Positive values indicate that the 3' codons appear in the genome more times than expected (good context) while negative values indicate that the 3' codons appear fewer times than expected assuming a random distribution (bad context). Residual values give a quantitative indication of the context bias, where values falling within the -3 to +3 interval are not statistically significant (no bias). See also Figure 2.