(a) Known regulatory elements
|
AACAGCTG
|
1
|
373
|
[0;1800]
|
-
|
1.64
|
-
|
Known AP-4/MyoD site
|
ATTTGCATA
|
3
|
882
|
[100;2000]
|
-
|
3.20
|
Oct-1
|
Known (mammalian) Oct-1 site
|
CACGTGC
|
5
|
825.5
|
-
|
-
|
1.02
|
Myc/Max, PHO4, USF
|
Known Myc/Max site
|
ATTTATGC
|
6
|
866
|
-
|
-
|
3.52
|
CdxA
|
Known CdxA site
|
TGACGTCA
|
9
|
825
|
-
|
-
|
2.36
|
CREB
|
Known CREB site
|
TGATAAG
|
11
|
760.5
|
[0;1100]
|
-
|
2.53
|
GATA
|
Known GATA site, carbohydrate metabolism (p < 10-5)
|
TATCGATA
|
12
|
168
|
[0;1900]
|
-
|
5.39
|
-
|
Known DRE site
|
TTTATGGC
|
14
|
978.5
|
-
|
-
|
2.82
|
Abd-B
|
Known Abd-B site
|
TAATTGA
|
24
|
907
|
[0;1900]
|
-
|
2.58
|
Ubx, Athb-1
|
Known Antp site
|
GAGAGAG
|
26
|
705.5
|
-
|
← (p < 10-4)
|
1.87
|
-
|
Known GAGA site, morphogenesis (p < 10-23)
|
CAGGTGC
|
33
|
1020.5
|
-
|
-
|
0.83
|
Sn
|
Known Snail site
|
TGACTCA
|
46
|
911
|
[100;2000]
|
-
|
1.89
|
AP-1, GCN4
|
Known AP-1 site
|
ATCAATCA
|
51
|
967
|
[0;1900]
|
-
|
1.72
|
Pbx-1
|
Known Pbx-1 site
|
AAGGTCA
|
93
|
1015.5
|
[400;1900]
|
-
|
1.16
|
HNF-4, ER
|
Known HRE
|
AACATGTG
|
105
|
994
|
[100;2000]
|
-
|
1.62
|
-
|
Known Twist site
|
GTAAACA
|
147
|
813
|
[0;1200]
|
-
|
2.54
|
Freac, SRY
|
Known DAF-16 site in C. elegans
|
(b) Novel predicted regulatory elements
|
ACACACAC
|
2
|
922.5
|
-
|
→ (p < 10-12)
|
1.97
|
-
|
Unknown site, embryonic development (p < 10-9)
|
CAAGGAG
|
13
|
1091
|
[200;2000]
|
← (p < 10-8)
|
0.84
|
-
|
Unknown site
|
GCACACAC
|
29
|
886
|
-
|
-
|
1.80
|
-
|
Unknown site, histogenesis (p < 10-5)
|
CAAGTTCA
|
30
|
920
|
[0;1900]
|
-
|
1.23
|
-
|
Unknown site
|
TAATTAA
|
31
|
871
|
[500;2000]
|
-
|
3.07
|
Ftz
|
Unknown palindromic homeodomain-like site
|
CAACAACA
|
42
|
968.5
|
[200;2000]
|
-
|
1.22
|
-
|
Unknown site, regulation of transcription (p < 10-5)
|
TGGCGCC
|
48
|
951
|
-
|
-
|
0.84
|
-
|
Unknown palindromic site
|
CCTGTTGC
|
111
|
653
|
[0;1800]
|
-
|
0.90
|
-
|
Unknown site
|
GTGTGACC
|
112
|
296
|
[0;1900]
|
→ (p < 10-5)
|
2.22
|
-
|
Unknown site
|
CAGGTAG
|
143
|
924.5
|
[0;1700]
|
-
|
0.94
|
-
|
Unknown site, cell fate commitment (p < 10-8)
|
CACACGCA
|
145
|
968.5
|
-
|
-
|
1.49
|
-
|
Unknown site, cellular morphogenesis (p < 10-5)
|
GTCAACAA
|
169
|
904
|
-
|
-
|
1.48
|
-
|
Unknown site, similar to DAF-16
|
AAATGGCG
|
205
|
592
|
-
|
-
|
1.54
|
-
|
Unknown site
|
TTGACCCA
|
239
|
860
|
[0;1700]
|
-
|
1.60
|
-
|
Unknown site
|
TGACACAC
|
273
|
860
|
-
|
-
|
1.83
|
-
|
Unknown site
|
TGTCAAC
|
281
|
999
|
[100;1900]
| |
1.55
|
-
|
Unknown site
|