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Figure 4 | Genome Biology

Figure 4

From: Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach

Figure 4

Distribution of median distances to ATG of all 7-mers, obtained when applying FastCompare to S. cerevisiae and S. bayanus. For each 7-mer, a median distance to ATG was calculated using the positions of matches upstream of S. cerevisiae genes within the conserved set for this 7-mer. The 8,170 median distances were then binned into 20-bp bins, and the resulting histogram was smoothed using a normal kernel. The median distances for several known binding sites in S. cerevisiae are also indicated (see Table 1).

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