Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization

Table 1 Divergently transcribed genes, grouped in pairs of which at least one is a target of Sko1, according to a targeted ChIP assay

Promoter distances are measured in nucleotides from the start codon of gene 1. Both genes of a pair are counted as positives in evaluating the algorithm described here, since distinguishing members of these pairs is beyond the resolution of Chip² experimental technology. ChIP, chromatin immunoprecipitation.

ISSN: 1474-760X