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Table 1 Putative regulatory motifs that were over-represented in the eight major clusters of differentially expressed genes

From: Genome-wide gene expression in response to parasitoid attack in Drosophila

Motif Time point (hours) Cluster, raw score and significance
Relish/NF-κB-like 1, 3, 48 Cluster 1 8.54 P < 0.001
   Cluster 2 8.01 P = 0.002
   Cluster 11 5.09 P < 0.006
   Cluster 12 17.3 P < 0.001
   Cluster 14 12.4 P = 0.001
serpent/GATA-like 1, 2, 3, 6, 72 Cluster 1 7.13 P < 0.001
   Cluster 2 21.2 P < 0.001
   Cluster 9 17.5 P < 0.001
   Cluster 10 8.43 P = 0.009
   Cluster 12 10.5 P = 0.001
STAT - Cluster 2 4.88 P < 0.001
   Cluster 12 4.83 P < 0.001
TATA-like 72 Cluster 1 5.57 P = 0.001
   Cluster 9 13.9 P < 0.001
   Cluster 10 6.21 P = 0.002
CCARCAGRCCSA 1, 2, 3, 6 Cluster 2 56.1 P < 0.001
   Cluster 12 27.8 P < 0.001
   Cluster 14 14.3 P = 0.001
CAWTSKATTC 2, 3 Cluster 2 17.5 P < 0.001
   Cluster 14 8.39 P = 0.008
AMTCAGT 2, 3, 6, 12, 72 Cluster 2 16.6 P < 0.001
   Cluster 12 10.9 P < 0.001
   Cluster 14 8.99 P = 0.001
  1. Putative motifs were identified as described in the text. The table shows the motifs identified, the time points at which they were significantly associated, and the clusters in which they appeared. For each cluster we give the raw score (a measure of the average occupancy in a set of sequences) and the associated significance value. Only for clusters with more than five genes.