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Table 4 Primers used for bisulfite sequencing

From: Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis

SIN3-11193
(A011193)
G->A: 5'-CCTCCTTCGTTGACCTGTCTTCATCGCAATGACTCAGCATAG-3'
C->T: 5'- GTCTTCTAATCAAGTTTAGTTATGTTAATGTTTTTGGATAGAAC-3'
SIN3-5300
(A005300)
G->A: 5'-TTCATTTGTTACCTACTATCATTTTCAAGAACGAAACAATG-3'
C->T: 5'-TAGTAGTTGTTCTCATCTTGTTTTTGGCAACTGGACGTGTC-3'
229R1
(A000229)
G->A:5'- CACCATGTTCTAGCCCTTGTTCGGTCGTCGTTCCTTCCGTGG-3'
C->T: 5'- AAAAGAAAGGCGTCGTGGAATCACCACTAGCTACAACCGC-3'
229R2
(A000229)
G->A:5'- TTAGAGCTTGTTTTCATTACCTTCTTCACACAACCTCCAAG-3'
C->T: 5'- TTTCAGGGTATCATGGTTCTCGACAAAGTAGGGTTATTATC-3'
TA11-4217
(A004217)
G->A:5'- CAACATAAGATTGTAGCCTTCCATCCTTGACCACGCTTTG-3'
C->T: 5'- TCTTAAGATAGGAGATGATGTGTAGGAATGGTTTCTGGCAC-3'
MU-4802
(A004802)
G->A:5'- AGCCATTATCATGTCCATCTGATCCTTCTACATGCCCTTG-3'
C->T: 5'- TATGTGAACGACTCATACACAAGAAATAGGTGGCGAGAAAC-3'
MU-PCR
(57802433)
G->A:5'- CACCAGCTCGAACACCACCAACAGATTCCTTGTAAATCTG-3'
C->T: 5'- GATGGAGCGAGTGACGGGGATGAAGAGTCTAGTGTGTGCAC-3'
  1. To amplify bisulfite-treated DNA, primers were synthesized with G→A (first sequence of the pair or C→T (second sequence), except for CGs and CNGs, which were synthesized with G→R or C→Y, respectively.