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Table 3 Gene pairs exceeding quantiles

From: Searching for differentially expressed gene combinations

  Colon: G/S Colon: O/O BRCA1: G/S BRCA1: O/O
Quantile # o/e # o/e # o/e # o/e
0 1,446 - 0 - 7 - 4 -
10-6 2,204 1.1·103 1 5.0·10-1 45 1.3.101 8 2.3·100
10-5 5,917 3.0·102 11 5.5·10-1 444 1.3.101 69 2.0·100
10-4 11,260 5.6·101 167 8.4·10-1 2,473 7.0.100 584 1.7·100
10-3 22,701 1.1·101 1,924 9.6·10-1 12488 3.6.100 5,063 1.4·100
  1. The number of gene pairs (#) that exceed a given quantile of the permutation distribution in the data for colon and BRCA1, along with the ratio of observed versus expected (o/e) number of gene pairs exceeding this threshold. The abbreviations G/S and O/O refer to the scoring function: G/S, gap/substitution scenario; O/O, on/off scoring situation.