Skip to main content
Figure 4 | Genome Biology

Figure 4

From: A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAs

Figure 4

Examples of yeast 3' UTR motifs and their best mammalian counterpart 3' UTR motif. All 72 mammalian motifs were transformed into alignments and then PSSMs, and compared with all 53 yeast motifs using CompareACE [21]. The figure presents, for the mammalian motifs by Xie et al. [11] its motif index in the original paper, the sequence logo, conservation rate, and a corresponding miRNA which is presumed to bind the motif. For the yeast motif, the motif name, sequence logo, significance of conservation across four sensu stricto yeast species, and the potential biological role are shown. The CompareACE score for similarity between the mammalian and yeast motif, along with a p-value on it, are presented on the right-hand side of the figure.

Back to article page