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Table 4 Amino acid patterns used to retrieve olfactory receptor genes

From: The dog and rat olfactory receptor repertoires

Pattern number Transmembrane domain Pattern
Dog   
1 TMII P-M-Y-x-[FL]-L-x(2)-[FL]-[AMS]-x(2)-[DE]
2 TMIII L-x(1,3)-M-x-[FILY]-D-R-x(2)-A-[IV]-[CS]-x-P-L-x-[HY]-x(3)-[ILM]
3 TMIII L-x(3)-M-x(0,1)-Y-x-[FLR]-[LY]-x(2)-[FILV]-[ACS]
4 TMVI K-x-[FL]-[AGHNST]-T-C-x-[AS]-H-x(3)-[AIV]
5 TMVII N-P-[FILMV]-[IV]-Y-[AGST]-[AILMV]-[KR]-x(2)-[DEKQ]
Rat   
1 TMII L-[HKNQR]-x-P-M-[FY]-x-[FIL]-L-x(2)-L-x(3)-[DEY]
2 TMIII M-[AS]-[FLY]-D-R-[FHY]-[AILMV]-A-[IV]-x(2)-P-L-x-[HY]-x(3)-[FILMV]-[DGHKNPRST]
3 TMV S-Y-x(2)-I-[FILV]-x-[AST]-[FIV]
4 TMVI K-x-[FILMV]-x-T-C-x-[ACPST]-H-[FILMV]-x(2)-[FILMV]
5 TMVII P-x-[LMV]-N-P-[FILMV]-x-Y-[ACGST]-x-[KNR]-x-[KNQRT]-[DEKPQ]-[FILMV]