Table 4 Amino acid patterns used to retrieve olfactory receptor genes
Pattern number | Transmembrane domain | Pattern |
|---|---|---|
Dog | Â | Â |
1 | TMII | P-M-Y-x-[FL]-L-x(2)-[FL]-[AMS]-x(2)-[DE] |
2 | TMIII | L-x(1,3)-M-x-[FILY]-D-R-x(2)-A-[IV]-[CS]-x-P-L-x-[HY]-x(3)-[ILM] |
3 | TMIII | L-x(3)-M-x(0,1)-Y-x-[FLR]-[LY]-x(2)-[FILV]-[ACS] |
4 | TMVI | K-x-[FL]-[AGHNST]-T-C-x-[AS]-H-x(3)-[AIV] |
5 | TMVII | N-P-[FILMV]-[IV]-Y-[AGST]-[AILMV]-[KR]-x(2)-[DEKQ] |
Rat | Â | Â |
1 | TMII | L-[HKNQR]-x-P-M-[FY]-x-[FIL]-L-x(2)-L-x(3)-[DEY] |
2 | TMIII | M-[AS]-[FLY]-D-R-[FHY]-[AILMV]-A-[IV]-x(2)-P-L-x-[HY]-x(3)-[FILMV]-[DGHKNPRST] |
3 | TMV | S-Y-x(2)-I-[FILV]-x-[AST]-[FIV] |
4 | TMVI | K-x-[FILMV]-x-T-C-x-[ACPST]-H-[FILMV]-x(2)-[FILMV] |
5 | TMVII | P-x-[LMV]-N-P-[FILMV]-x-Y-[ACGST]-x-[KNR]-x-[KNQRT]-[DEKPQ]-[FILMV] |