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Table 3 Criteria used for pattern recognition with the PRATT program [28]

From: The dog and rat olfactory receptor repertoires

Parameter Description Value
C% Pattern conservation 95% (dog)
90% (rat)
L Maximum pattern length 25 amino acids
S Research complexity High (E = 0; dog)
Medium (E = 1; rat)
PN Maximum number of pattern symbols 25
PX Maximum number of consecutive undetermined amino acids 5
FN Maximum number of flexible gaps 2
FL Maximum flexibility of a flexible wildcard 3
FP Maximum flexibility product 10