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Table 5 Common protein domains identified in the A. mexicanum contigs and comparison to domain occurrences in other vertebrate species

From: An Ambystoma mexicanumEST sequencing project: analysis of 17,352 expressed sequence tags from embryonic and regenerating blastema cDNA libraries

Domain

A. mexicanum

H. sapiens

M. musculus

X. laevis

G. gallus

D. rerio

EF-hand

10

319

308

36

48

38

Cyclin

12

60

58

20

9

15

Chromo

5

26

26

8

5

5

Prox1

5

4

2

2

1

2

HLH

8 (1)

167

179

83

70

75

HOX

13 (19)

280

352

196

142

250

PAX

1 (4)

12

31

25

9

13

EGF

10

310

281

26

50

32

SET

2

82

64

4

3

1

RAS

37

220

194

34

11

27

RhoGEF

4

124

98

4

2

3

PH

2

453

374

14

10

18

PX

4

70

74

2

0

3

WD40

39

547

490

63

12

50

Cullin

3

8

20

0

0

2

F-box

2

119

130

11

0

8

HectC

3

64

66

4

2

1

RING

17

374

325

18

16

29

KH

23 (1)

71

52

20

7

10

RRM

101 (2)

443

438

94

23

69

PDZ

8

260

252

17

11

23

Kinase

69 (2)

949

954

210

122

156

LIM

5

128

125

22

19

22

PHD

4

164

122

13

4

3

  1. Numbers in parentheses indicate the number of domains that had been annotated to a protein sequence from A. mexicanum prior to this project.