TY - JOUR AU - Shubin, N. W. D. PY - 1996 DA - 1996// TI - Phylogeny, variation, and morphological Integration. JO - Am Zool VL - 36 UR - https://doi.org/10.1093/icb/36.1.51 DO - 10.1093/icb/36.1.51 ID - Shubin1996 ER - TY - JOUR AU - Roth, G. AU - Nishikawa, K. C. AU - Wake, D. B. PY - 1997 DA - 1997// TI - Genome size, secondary simplification, and the evolution of the brain in salamanders. JO - Brain Behav Evol VL - 50 UR - https://doi.org/10.1159/000113321 DO - 10.1159/000113321 ID - Roth1997 ER - TY - JOUR AU - Rabinowicz, P. D. PY - 2003 DA - 2003// TI - Constructing gene-enriched plant genomic libraries using methylation filtration technology. JO - Methods Mol Biol VL - 236 ID - Rabinowicz2003 ER - TY - STD TI - Animal Genome Size Database. [http://www.genomesize.com] UR - http://www.genomesize.com ID - ref4 ER - TY - JOUR AU - Edstrom, J. E. AU - Kawiak, J. PY - 1961 DA - 1961// TI - Microchemical deoxyribonucleic acid determination in individual cells. JO - J Biophys Biochem Cytol VL - 9 UR - https://doi.org/10.1083/jcb.9.3.619 DO - 10.1083/jcb.9.3.619 ID - Edstrom1961 ER - TY - JOUR AU - Capriglione, T. AU - Olmo, E. AU - Odierna, G. AU - Improta, B. AU - Morescalchi, A. PY - 1987 DA - 1987// TI - Cytofluorometric DNA base determination in vertebrate species with different genome sizes. JO - Basic Appl Histochem VL - 31 ID - Capriglione1987 ER - TY - JOUR AU - Voss, S. R. AU - Smith, J. J. AU - Gardiner, D. M. AU - Parichy, D. M. PY - 2001 DA - 2001// TI - Conserved vertebrate chromosome segments in the large salamander genome. JO - Genetics VL - 158 ID - Voss2001 ER - TY - JOUR AU - Palmer, L. E. AU - Rabinowicz, P. D. AU - O'Shaughnessy, A. L. AU - Balija, V. S. AU - Nascimento, L. U. AU - Dike, S. AU - de la Bastide, M. AU - Martienssen, R. A. AU - McCombie, W. R. PY - 2003 DA - 2003// TI - Maize genome sequencing by methylation filtration. JO - Science VL - 302 UR - https://doi.org/10.1126/science.1091265 DO - 10.1126/science.1091265 ID - Palmer2003 ER - TY - JOUR AU - Titus, T. A. AU - Larson, A. PY - 1995 DA - 1995// TI - A molecular phylogenetic perspective on the evolutionary radiation of the salamander family Salamandridae. JO - Syst Biol VL - 44 UR - https://doi.org/10.1093/sysbio/44.2.125 DO - 10.1093/sysbio/44.2.125 ID - Titus1995 ER - TY - STD TI - The Indiana University Axolotl Colony. [http://www.indiana.edu/~axolotl] UR - http://www.indiana.edu/~axolotl ID - ref10 ER - TY - JOUR AU - Ewing, B. AU - Hillier, L. AU - Wendl, M. C. AU - Green, P. PY - 1998 DA - 1998// TI - Base-calling of automated sequencer traces using phred. I. Accuracy assessment. JO - Genome Res VL - 8 UR - https://doi.org/10.1101/gr.8.3.175 DO - 10.1101/gr.8.3.175 ID - Ewing1998 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Sutton, G. AU - White, O. AU - Adams, M. AU - Kerlavage, W. PY - 1995 DA - 1995// TI - TIGR Assembler: a new tool for assembling large shotgun sequencing projects. JO - Genome Sci Technol VL - 1 UR - https://doi.org/10.1089/gst.1995.1.9 DO - 10.1089/gst.1995.1.9 ID - Sutton1995 ER - TY - CHAP AU - Voss, S. R. AU - Parichy, D. M. PY - 2001 DA - 2001// TI - Salamander Genome Project. BT - Axolotl Newslett ID - Voss2001 ER - TY - STD TI - Salamander Genome Project. [http://salamander.uky.edu] UR - http://salamander.uky.edu ID - ref15 ER - TY - STD TI - Supplementary data. [http://www.mpi-cbg.de/~habermann] UR - http://www.mpi-cbg.de/~habermann ID - ref16 ER - TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. AU - Botstein, D. AU - Butler, H. AU - Cherry, J. M. AU - Davis, A. P. AU - Dolinski, K. AU - Dwight, S. S. AU - Eppig, J. T. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. JO - Nat Genet VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Marchler-Bauer, A. AU - Panchenko, A. R. AU - Shoemaker, B. A. AU - Thiessen, P. A. AU - Geer, L. Y. AU - Bryant, S. H. PY - 2002 DA - 2002// TI - CDD: a database of conserved domain alignments with links to domain three-dimensional structure. JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.281 DO - 10.1093/nar/30.1.281 ID - Marchler-Bauer2002 ER - TY - JOUR AU - Johnson, A. D. AU - Drum, M. AU - Bachvarova, R. F. AU - Masi, T. AU - White, M. E. AU - Crother, B. I. PY - 2003 DA - 2003// TI - Evolution of predetermined germ cells in vertebrate embryos: implications for macroevolution. JO - Evol Dev VL - 5 UR - https://doi.org/10.1046/j.1525-142X.2003.03048.x DO - 10.1046/j.1525-142X.2003.03048.x ID - Johnson2003 ER - TY - JOUR AU - Nakayama, T. AU - Snyder, M. A. AU - Grewal, S. S. AU - Tsuneizumi, K. AU - Tabata, T. AU - Christian, J. L. PY - 1998 DA - 1998// TI - XenopusSmad8 acts downstream of BMP-4 to modulate its activity during vertebrate embryonic patterning. JO - Development VL - 125 ID - Nakayama1998 ER - TY - JOUR AU - Voss, S. R. AU - Prudic, K. L. AU - Oliver, J. C. AU - Shaffer, H. B. PY - 2003 DA - 2003// TI - Candidate gene analysis of metamorphic timing in ambystomatid salamanders. JO - Mol Ecol VL - 12 UR - https://doi.org/10.1046/j.1365-294X.2003.01806.x DO - 10.1046/j.1365-294X.2003.01806.x ID - Voss2003 ER - TY - JOUR AU - Voss, S. R. AU - Shaffer, H. B. AU - Taylor, J. AU - Safi, R. AU - Laudet, V. PY - 2000 DA - 2000// TI - Candidate gene analysis of thyroid hormone receptors in metamorphosing vs. nonmetamorphosing salamanders. JO - Heredity VL - 85 UR - https://doi.org/10.1046/j.1365-2540.2000.00714.x DO - 10.1046/j.1365-2540.2000.00714.x ID - Voss2000 ER - TY - JOUR AU - Shi, Y. B. AU - Wong, J. AU - Puzianowska-Kuznicka, M. AU - Stolow, M. A. PY - 1996 DA - 1996// TI - Tadpole competence and tissue-specific temporal regulation of amphibian metamorphosis: roles of thyroid hormone and its receptors. JO - BioEssays VL - 18 UR - https://doi.org/10.1002/bies.950180509 DO - 10.1002/bies.950180509 ID - Shi1996 ER - TY - JOUR AU - Su, J. Y. AU - Rempel, R. E. AU - Erikson, E. AU - Maller, J. L. PY - 1995 DA - 1995// TI - Cloning and characterization of the Xenopuscyclin-dependent kinase inhibitor p27XIC1. JO - Proc Natl Acad Sci USA VL - 92 UR - https://doi.org/10.1073/pnas.92.22.10187 DO - 10.1073/pnas.92.22.10187 ID - Su1995 ER - TY - JOUR AU - Shou, W. AU - Dunphy, W. G. PY - 1996 DA - 1996// TI - Cell cycle control by Xenopusp28Kix1, a developmentally regulated inhibitor of cyclin-dependent kinases. JO - Mol Biol Cell VL - 7 UR - https://doi.org/10.1091/mbc.7.3.457 DO - 10.1091/mbc.7.3.457 ID - Shou1996 ER - TY - JOUR AU - Putta, S. AU - Smith, J. J. AU - Walker, J. AU - Mathieu, R. AU - Weisrock, D. W. AU - Monaghan, J. AU - Samuels, A. K. AU - Kump, K. AU - King, D. C. AU - Maness, N. J. PY - 2004 DA - 2004// TI - From biomedicine to natural history research: EST resources for ambystomatid salamanders. JO - BMC Genomics VL - 5 UR - https://doi.org/10.1186/1471-2164-5-54 DO - 10.1186/1471-2164-5-54 ID - Putta2004 ER - TY - STD TI - The Axolotl EST database. [https://intradb.mpi-cbg.de/axolotl] UR - https://intradb.mpi-cbg.de/axolotl ID - ref27 ER - TY - JOUR AU - Pennisi, I. PY - 2003 DA - 2003// TI - Human genome. A low number wins the GeneSweep pool. JO - Science VL - 300 UR - https://doi.org/10.1126/science.300.5625.1484b DO - 10.1126/science.300.5625.1484b ID - Pennisi2003 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1994 DA - 1994// TI - CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.22.4673 DO - 10.1093/nar/22.22.4673 ID - Thompson1994 ER - TY - JOUR AU - Huang, X. AU - Madan, A. PY - 1999 DA - 1999// TI - CAP3: A DNA sequence assembly program. JO - Genome Res VL - 9 UR - https://doi.org/10.1101/gr.9.9.868 DO - 10.1101/gr.9.9.868 ID - Huang1999 ER - TY - CHAP AU - Iseli, C. AU - Jongeneel, C. V. AU - Bucher, P. PY - 1999 DA - 1999// TI - ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. BT - Proc Int Conf Intell Syst Mol Biol ID - Iseli1999 ER - TY - JOUR AU - Jeanmougin, F. AU - Thompson, J. D. AU - Gouy, M. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1998 DA - 1998// TI - Multiple sequence alignment with Clustal X. JO - Trends Biochem Sci VL - 23 UR - https://doi.org/10.1016/S0968-0004(98)01285-7 DO - 10.1016/S0968-0004(98)01285-7 ID - Jeanmougin1998 ER - TY - JOUR AU - Felsenstein, J. PY - 1989 DA - 1989// TI - PHYLIP - phylogeny inference package (version 3.2). JO - Cladistics VL - 5 ID - Felsenstein1989 ER - TY - JOUR AU - Perriere, G. AU - Gouy, M. PY - 1996 DA - 1996// TI - WWW-query: an on-line retrieval system for biological sequence banks. JO - Biochimie VL - 78 UR - https://doi.org/10.1016/0300-9084(96)84768-7 DO - 10.1016/0300-9084(96)84768-7 ID - Perriere1996 ER -