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Table 1 Transcription factors that tend to associate with nucleosome-depleted promoters

From: Global nucleosome occupancy in yeast

Transcription factor Pathway Number of targets Nucleosome-depleted Functionally cooperative
Rap1 Biosynthesis 291 35%  
Fhl1 Biosynthesis 137 48%
Swi4 Cell cycle 165 36%
Hsf1 Environmental response 114 35%
Gat3 Metabolism 119 31%
Cin5 Environmental response 200 23%
Phd1 Metabolism 138 25%
Dal81 Metabolism 70 34%
Ndd1 Cell cycle 122 26%
Yap6 Environmental response 123 26%
Fkh2 Cell cycle 145 24%
Pdr1 Environmental response 103 27%
Ino4 Metabolism 118 25%  
Smp1 Environmental response 99 27%
Yap5 Environmental response 113 26%
Ash1 Development 41 41%  
  1. Transcription factors are ranked according to the significance of their association with nucleosome-depleted promoters, as determined by a hypergeometric model. Shown are the 16 top-ranked factors along with relevant physiologic pathway, number of promoters bound [1], and percent of target promoters that are nucleosome-depleted. Factors found previously to be functionally cooperative are indicated [22].