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Table 6 Two groups of plant-specific genes exhibit common expression profiles

From: Phylogenetic profiling of the Arabidopsis thalianaproteome: what proteins distinguish plants from other organisms?

Cluster 1ā€ 

PP*

Representative EST clone ID

Locus

Description

PS

111O21XP

At1g19180

Expressed protein

PS

123B21T7

At1g30755

Expressed protein

PS

209F11T7

At1g63090

F-box protein (SKP1 interacting partner 3-related)

PS

181I16T7

At1g72510

Expressed protein

PS

148B19T7

At1g74950

Expressed protein

PS

40F4T7

At2g23320

Identical to WRKY DNA-binding protein 15

EBA

240G12T7

At2g31880

Putative leucine-rich repeat transmembrane protein kinase

EBA

169J16T7

At2g39660

Putative protein kinase

PS

172K21XP

At3g16860

Expressed protein

PS

94C19T7

At3g25870

Expressed protein

PS

114O7T7

At4g12070

Expressed protein

PS

250F15T7

At4g19515

Similar to disease resistance protein

PS

137B1T7

At4g30390

Expressed protein

PS

122N24T7

At5g13180

NAM-like protein; hypothetical senescence upregulated protein SENU5

PS

204H15T7

At5g13200

GRAM-domain-containing protein similar to ABA-responsive protein

E

195M6T7

At5g22250

CCR4-associated factor-like protein

PS

200J12T7

At5g62520

Expressed protein

Cluster 2 ā€”

PS

169C12T7

At1g05250

Putative peroxidase

PS

113H5XP

At1g52050

Jacalin lectin family similar to myrosinase-binding protein homolog

EBA

121N12T7

At1g61590

Putative serine/threonine protein kinase

PS

40E4T7

At1g74770

Hypothetical protein; predicted by GenemarkHMM

B

34E12T7

At3g24670

Polysaccharide lyase family 1 (pectate lyase)

PS

122J15T7

At4g14060

Major latex protein (MLP)-related

PS

194B13T7

At4g15390

Acyltransferase family

PS

204N5XP

At4g26010

Putative peroxidase

PS

144C19T7

At5g07080

Transferase family similar to 10-deacetylbaccatin III-10-O-acetyl transferase

PS

116F2T7

At5g45070

Putative disease resistance protein (TIR class)

PS

110O2T7

At5g57685

Unknown protein; predicted by GenemarkHMM

  1. Experiments were ranked according to the proportion of genes in the cluster that were differentially expressed. The most important experiments for each cluster are indicated. *PP, phylogenetic profile. ā€ Low expression in flowers compared to leaves, unstable and moderately unstable transcripts. ā€”High expression in roots as compared to a reference made of the whole plant, repressed during shoot development from root explants. PS, plant specific; EBA, Arabidopsis protein with similarity to proteins in other eukaryotes, bacteria and archaea; B, Arabidopsis protein with similarity to proteins in bacteria.