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Table 4 Plant-specific proteins that are found in the AraCyc database

From: Phylogenetic profiling of the Arabidopsis thalianaproteome: what proteins distinguish plants from other organisms?

Locus Protein description Metabolic pathway Enzyme name Reaction*
At1g78240 Similar to early-responsive to dehydration stress ERD3 protein Carbon monoxide dehydrogenase pathway Methyltransferase 2.1.1.-
At1g08550 Violaxanthin de-epoxidase precursor, putative Carotenoid biosynthesis Violaxanthin de-epoxidase RXN-325
At1g08550 Violaxanthin de-epoxidase precursor, putative Carotenoid biosynthesis Violaxanthin de-epoxidase RXN-314
At1g78240 Similar to early-responsive to dehydration stress ERD3 protein CO2 formation from methanol Methyltransferase METHTRANSBARK-RXN
At1g53520 Chalcone-flavanone isomerase-related Flavonoid biosynthesis Chalcone isomerase 5.5.1.6
At5g05270 Chalcone-flavanone isomerase family Flavonoid biosynthesis Chalcone-flavonone isomerase 5.5.1.6
At5g66220 Putative chalcone-flavanone isomerase (chalcone isomerase) (CHI) Flavonoid biosynthesis Chalcone isomerase 5.5.1.6
At1g27690 Lipase -related Glycerol biosynthesis Lipase 3.1.1.3
At5g03980 gdsl-motif lipase/hydrolase protein Glycerol biosynthesis Lipase 3.1.1.3
At1g13280 Allene oxide cyclase family similar to ERD12 Jasmonic acid biosynthesis Allene oxide cyclase 5.3.99.6
At1g19640 S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase (JMT) Jasmonic acid biosynthesis S-adenosyl L-methionine:jasmonic acid carboxyl methyltransferase RXN1F-28
At1g13280 Allene oxide cyclase family similar to ERD12 Lipoxygenase pathway Allene oxide cyclase 5.3.99.6
At4g21610 Lsd1 like protein L-serine degradation LSD1 4.2.1.13
At1g53520 Chalcone-flavanone isomerase-related Phytoalexin biosynthesis Chalcone isomerase 5.5.1.6
At5g66220 Putative chalcone-flavanone isomerase (chalcone isomerase) (CHI) Phytoalexin biosynthesis Chalcone isomerase 5.5.1.6
At5g05270 Chalcone-flavanone isomerase family Phytoalexin biosynthesis Chalcone-flavonone isomerase 5.5.1.6
At1g03040 bHLH protein component of the pyruvate dehydrogenase complex E3 Pyruvate dehydrogenase Pyruvate dehydrogenase (lipoamide) 1.2.4.1
At2g45880 Glycosyl hydrolase family 14 (beta-amylase) Starch degradation Beta-amylase 3.2.1.2
At3g23920 Glycosyl hydrolase family 14 (beta-amylase) Starch degradation Beta-amylase 3.2.1.2
At4g15210 Glycosyl hydrolase family 14 (beta-amylase) Starch degradation Beta-amylase 3.2.1.2
At4g17090 Glycosyl hydrolase family 14 (beta-amylase) Starch degradation Beta-amylase 3.2.1.2
At5g18670 Glycosyl hydrolase family 14 (beta-amylase) Starch degradation Beta-amylase 3.2.1.2
At5g45300 Glycosyl hydrolase family 14 (beta-amylase) Starch degradation Beta-amylase 3.2.1.2
At5g55700 Glycosyl hydrolase family 14 (beta-amylase) Starch degradation Beta-amylase 3.2.1.2
At2g32290 Glycosyl hydrolase family 14 (beta-amylase) Starch degradation Beta-amylase 3.2.1.2
  1. *EC number is given when available, otherwise the AraCyc [70] frame name for the reaction is given. AraCyc designation for this metabolic pathway is 'Starch and cellulose biosynthesis'. However, as far as we know, genes in this family are only involved in starch degradation.