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Table 4 Plant-specific proteins that are found in the AraCyc database

From: Phylogenetic profiling of the Arabidopsis thalianaproteome: what proteins distinguish plants from other organisms?

Locus

Protein description

Metabolic pathway

Enzyme name

Reaction*

At1g78240

Similar to early-responsive to dehydration stress ERD3 protein

Carbon monoxide dehydrogenase pathway

Methyltransferase

2.1.1.-

At1g08550

Violaxanthin de-epoxidase precursor, putative

Carotenoid biosynthesis

Violaxanthin de-epoxidase

RXN-325

At1g08550

Violaxanthin de-epoxidase precursor, putative

Carotenoid biosynthesis

Violaxanthin de-epoxidase

RXN-314

At1g78240

Similar to early-responsive to dehydration stress ERD3 protein

CO2 formation from methanol

Methyltransferase

METHTRANSBARK-RXN

At1g53520

Chalcone-flavanone isomerase-related

Flavonoid biosynthesis

Chalcone isomerase

5.5.1.6

At5g05270

Chalcone-flavanone isomerase family

Flavonoid biosynthesis

Chalcone-flavonone isomerase

5.5.1.6

At5g66220

Putative chalcone-flavanone isomerase (chalcone isomerase) (CHI)

Flavonoid biosynthesis

Chalcone isomerase

5.5.1.6

At1g27690

Lipase -related

Glycerol biosynthesis

Lipase

3.1.1.3

At5g03980

gdsl-motif lipase/hydrolase protein

Glycerol biosynthesis

Lipase

3.1.1.3

At1g13280

Allene oxide cyclase family similar to ERD12

Jasmonic acid biosynthesis

Allene oxide cyclase

5.3.99.6

At1g19640

S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase (JMT)

Jasmonic acid biosynthesis

S-adenosyl L-methionine:jasmonic acid carboxyl methyltransferase

RXN1F-28

At1g13280

Allene oxide cyclase family similar to ERD12

Lipoxygenase pathway

Allene oxide cyclase

5.3.99.6

At4g21610

Lsd1 like protein

L-serine degradation

LSD1

4.2.1.13

At1g53520

Chalcone-flavanone isomerase-related

Phytoalexin biosynthesis

Chalcone isomerase

5.5.1.6

At5g66220

Putative chalcone-flavanone isomerase (chalcone isomerase) (CHI)

Phytoalexin biosynthesis

Chalcone isomerase

5.5.1.6

At5g05270

Chalcone-flavanone isomerase family

Phytoalexin biosynthesis

Chalcone-flavonone isomerase

5.5.1.6

At1g03040

bHLH protein component of the pyruvate dehydrogenase complex E3

Pyruvate dehydrogenase

Pyruvate dehydrogenase (lipoamide)

1.2.4.1

At2g45880

Glycosyl hydrolase family 14 (beta-amylase)

Starch degradationā€ 

Beta-amylase

3.2.1.2

At3g23920

Glycosyl hydrolase family 14 (beta-amylase)

Starch degradationā€ 

Beta-amylase

3.2.1.2

At4g15210

Glycosyl hydrolase family 14 (beta-amylase)

Starch degradationā€ 

Beta-amylase

3.2.1.2

At4g17090

Glycosyl hydrolase family 14 (beta-amylase)

Starch degradationā€ 

Beta-amylase

3.2.1.2

At5g18670

Glycosyl hydrolase family 14 (beta-amylase)

Starch degradationā€ 

Beta-amylase

3.2.1.2

At5g45300

Glycosyl hydrolase family 14 (beta-amylase)

Starch degradationā€ 

Beta-amylase

3.2.1.2

At5g55700

Glycosyl hydrolase family 14 (beta-amylase)

Starch degradationā€ 

Beta-amylase

3.2.1.2

At2g32290

Glycosyl hydrolase family 14 (beta-amylase)

Starch degradationā€ 

Beta-amylase

3.2.1.2

  1. *EC number is given when available, otherwise the AraCyc [70] frame name for the reaction is given. ā€ AraCyc designation for this metabolic pathway is 'Starch and cellulose biosynthesis'. However, as far as we know, genes in this family are only involved in starch degradation.