Skip to main content

Table 2 Prediction of subcellular localization and transmembrane helices

From: Phylogenetic profiling of the Arabidopsis thalianaproteome: what proteins distinguish plants from other organisms?

TargetP predictions    
  Unknown plant-specific proteins Known plant-specific proteins Whole Arabidopsis protein set
Any other location 1,073 (53%) 1,006 (55%) 15,706 (58%)
Chloroplast 360 (18%) 253 (14%) 3,972 (15%)
Mitochondria 254 (13%) 178 (10%) 2,963 (11%)
Secretory pathway 330 (16%) 394 (22%) 4,647 (17%)
TMHMM predictions    
Membrane associated 220 (11%) 89 (5%) 2,075 (8%)
Total 2,017 1,831 27,288
  1. Total number of protein sequences per category (percentage relative to the total in the group).