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Table 4 TXTGate profiling of cluster E from Eisen et al. [39]

From: TXTGate: profiling gene groups with text-based information

Gene symbol Cluster terms in Blaschke et al. [16] Terms from TXTGate
Subcluster E1 TPT1 FBA1 glyceraldehyde-3-phosphate* glyceraldehyd_3_phosphat_dehydrogenas
  GPM1 TKL1 glyceraldehyde-3-phosphate dehydrogenase* glycolyt
  PGK1 CDC19 phosphoglycerate kinase* glucos
  TDH3 HXK2 phosphoglycerate* enzym
  TDH2 TYE7 mutase* glycolysi
  ENO2 PFK1 dehydrogenase carbon
  TDH1 ACS2 enolase pyruv_kinas
   glycerol-3-phosphate dehydrogenase ethanol
   osmotic stress phosphoglycer_kinas
   phospoglycerate growth
Subcluster E2 PDC5 PDC1 alcohol* pyruv_decarboxylas
  PDC6 transketolase* pyruv
   catabolite repression glucos
   decarboxylase enzym
   ethanol alcohol
   glucose decarboxyl
   glucose repression ethanol
   hexokinases ferment
   pyruvate thiamin
   pyruvate decarboxylase decarboxylas
  1. Profiling is by subclustering (k = 2). High-scoring terms are shown for each subcluster E1 and E2. We also show the terms (excluding gene names) resulting from a similar analysis conducted by Blaschke et al. [16]. *Terms that were labeled specific to a subcluster by Blaschke et al. Although several of their settings are different from ours (because of the differences in MEDLINE corpus, textual analysis and the cluster algorithm used), a comparison of the term profiles in both analyses shows that TXTGate also identifies E1 as related to glycerol, whereas E2 is more related to pyruvate metabolism and ethanol fermentation. Complete data can be found in Additional data file 1.