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Table 1 Genomes contained in Prolinks

From: Prolinks: a database of protein functional linkages derived from coevolution

Taxonomy ID

Name

Lineage

24

Shewanella putrefaciens

Bacteria

139

Borrelia burgdorferi

Bacteria

158

Treponema denticola

Bacteria

160

Treponema pallidum

Bacteria

197

Campylobacter jejuni

Bacteria

287

Pseudomonas aeruginosa

Bacteria

303

Pseudomonas putida

Bacteria

358

Agrobacterium tumefaciens

Bacteria

382

Sinorhizobium meliloti

Bacteria

485

Neisseria gonorrhoeae

Bacteria

520

Bordetella pertussis

Bacteria

601

Salmonella typhi

Bacteria

632

Yersinia pestis

Bacteria

666

Vibrio cholerae

Bacteria

714

Actinobacillus actinomycetemcomitans

Bacteria

747

Pasteurella multocida

Bacteria

782

Rickettsia prowazekii

Bacteria

837

Porphyromonas gingivalis

Bacteria

881

Desulfovibrio vulgaris

Bacteria

920

Acidithiobacillus ferrooxidans

Bacteria

956

Wolbachia sp.

Bacteria

1097

Chlorobium tepidum

Bacteria

1148

Synechocystis sp. PCC 6803

Bacteria

1299

Deinococcus radiodurans

Bacteria

1309

Streptococcus mutans

Bacteria

1313

Streptococcus pneumoniae

Bacteria

1314

Streptococcus pyogenes

Bacteria

1351

Enterococcus faecalis

Bacteria

1352

Enterococcus faecium

Bacteria

1360

Lactococcus lactis subsp. lactis

Bacteria

1392

Bacillus anthracis

Bacteria

1423

Bacillus subtilis

Bacteria

1488

Clostridium acetobutylicum

Bacteria

1496

Clostridium difficile

Bacteria

1717

Corynebacterium diphtheriae

Bacteria

1764

Mycobacterium avium

Bacteria

1769

Mycobacterium leprae

Bacteria

1772

Mycobacterium smegmatis

Bacteria

1773

Mycobacterium tuberculosis

Bacteria

2097

Mycoplasma genitalium

Bacteria

2104

Mycoplasma pneumoniae

Bacteria

2107

Mycoplasma pulmonis

Bacteria

2130

Ureaplasma urealyticum

Bacteria

2190

Methanocaldococcus jannaschii

Archaea

2234

Archaeoglobus fulgidus

Archaea

2287

Sulfolobus solfataricus

Archaea

2303

Thermoplasma acidophilum

Archaea

2336

Thermotoga maritima

Bacteria

2371

Xylella fastidiosa

Bacteria

3702

Arabidopsis thaliana

Eukaryota

4932

Saccharomyces cerevisiae

Eukaryota

5476

Candida albicans

Eukaryota

6239

Caenorhabditis elegans

Eukaryota

7227

Drosophila melanogaster

Eukaryota

29292

Pyrococcus abyssi

Archaea

35554

Geobacter sulfurreducens

Bacteria

50339

Thermoplasma volcanium

Archaea

53953

Pyrococcus horikoshii

Archaea

56636

Aeropyrum pernix

Archaea

61435

Dehalococcoides ethenogenes

Bacteria

63363

Aquifex aeolicus

Bacteria

64091

Halobacterium sp. NRC-1

Archaea

69394

Caulobacter vibrioides

Bacteria

71421

Haemophilus influenzae Rd KW20

Bacteria

83331

Mycobacterium tuberculosis CDC1551

Bacteria

83333

Escherichia coli K12

Bacteria

83334

Escherichia coli O157:H7

Bacteria

83554

Chlamydophila psittaci

Bacteria

83560

Chlamydia muridarum

Bacteria

85962

Helicobacter pylori 26695

Bacteria

85963

Helicobacter pylori J99

Bacteria

86665

Bacillus halodurans

Bacteria

107806

Buchnera aphidicola str. APS

Bacteria

115711

Chlamydophila pneumoniae AR39

Bacteria

115713

Chlamydophila pneumoniae CWL029

Bacteria

122586

Neisseria meningitidis MC58

Bacteria

122587

Neisseria meningitidis Z2491

Bacteria

129958

Carboxydothermus hydrogenoformans

Bacteria

138677

Chlamydophila pneumoniae J138

Bacteria

145262

Methanothermobacter thermautotrophicus

Archaea

155864

Escherichia coli O157:H7 EDL933

Bacteria

158878

Staphylococcus aureus subsp. aureus Mu50

Bacteria

158879

Staphylococcus aureus subsp. aureus N315

Bacteria