Figure 18
Residuals versus X≡log2(Cy3) scatter plots for nine different cDNA microarray experiments. Each plot, yer033c, cup5, spf1, ymr031c, vma8, yap1, sod1, fre6 and cin5, shows the 95% (innermost), 99%, 99.8%, 99.98% and 99.998% (outermost) adjusted supsmu-based STIs (covered with probability at least 0.9999). Red and blue dots mark up-regulated and down-regulated genes, respectively, with p-value ≤ 0.01 (≤ 0.05). The corresponding knockout genes are identified as the most prominent down-regulated ones (cin5, sod1, spf1, vma8 and yer033c) or one of the most prominent down-regulated genes (cup5, fre6, yap1 and ymr031c) with p-values always much less than 0.00002.