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Table 2 Exemplars of mouse LTR retrotransposon families characterized in this study

From: Long terminal repeat retrotransposons of Mus musculus

Family Accession number Location Chromosome number LTR length Element length (bp) TSD LTR-LTR identity (%)
Mmr1_MmERV AC116580 60869-69866 18 562 8,998 GATG 99.1
Mmr2_MuLV AC122266 144706-153433 8 523 8,728 AGCT 99.8
Mmr3_MuRRS AC131730 135746-141194 5 482 5,468 TGTG 97.6
Mmr4 AC129291 52257-60643 6 431 8,391 GCTG ND
Mmr5 AC125146 55312-65867 2 458 10,556 CCTTGT 96.0
Mmr6 AL645686 82031-82609* 13 ND ND ND ND
Mmr7 AL669907 109127-109663* 11 ND ND ND ND
Mmr8 AL63044 52153-57800 11 415 5,648 GCTCAA ND
Mmr9 AC093445 57410-58100* 1 ND ND ND ND
Mmr10_IAP AC066688 63525-70600 6 336 7,076 ATAACT 99.7
Mmr11_MMTV AC122322 95423-105323 6 1328 9,901 TTGTAC 100.0
Mmr12 AL669825 36552-43387 11 398 6,836 CTTCAT 90.0
Mmr13 AC122304 117988-118560* 18 ND ND ND ND
Mmr14 AC127274 11141-11509 17 380 8,969 AGAAAG ND
Mmr15 AL669827 49044-57291 11 306 8,248 CAGAGA 96.0
Mmr16 BX294008 113859-114576* X ND ND ND ND
Mmr17 AC090008 169300-176476 2 351 7,177 GCCTCT 93.0
Mmr18 AC093341 96667-101604 5 359 4,938 GGGATC 94.4
Mmr19_MusD AC24426 12212-13012* 13 ND ND ND ND
Mmr20_MuERV_L AF481949 811-7241 12 494 6,331 GTCGG 100.0
Mmr21_MaLR AL672246 35744-37735 X 492 1,992 GTCAC ND
  1. *Endpoints given are for RT not the whole element. ND, not determined.