Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants

Table 5 Motifs that are over-represented in Model 3 CN-enhanced or in the C-only inductive model

Motif	C-only inductive p-value	Model 3 CN-enhanced p-value	Element name
Ferredoxin-related motifs
RGAAVMANA	NS	0.0262	CN1
GNAANVMGAHNM	NS	0.0089	CN2
GAWYTGA	0.0073	NS	C1
ARNNGANNCAA	0.00049	NS	C2
KMSAGAG	0.0322	NS	C3
WMNCHGAANC	0.0091	NS	C4
GAGARRDDG	0.0375	NS	C5
Protein-synthesis related motifs
WKGGGCC	<0.0001	<0.0001	C6
GGCCSAW	<0.0001	<0.0001	C7
AAACYCNA	0.0375	0.0038	C8
WTBGGCY	0.0022	0.011	C9
GDNTTGKAM	0.0359	NS	C10
AAGAAAA	0.0344	NS	C11

Nucleotide abbreviations: R; A or G, Y; C or T, W; A or T, S; G or C, M; A or C, K; G or T, H; A, C or T, B; G, C or T, V; G, A or C, D; G, A or TC, N; G, A, C or T.

ISSN: 1474-760X