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Table 5 Motifs that are over-represented in Model 3 CN-enhanced or in the C-only inductive model

From: Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants

Motif C-only inductive p-value Model 3 CN-enhanced p-value Element name
Ferredoxin-related motifs    
RGAAVMANA NS 0.0262 CN1
GNAANVMGAHNM NS 0.0089 CN2
GAWYTGA 0.0073 NS C1
ARNNGANNCAA 0.00049 NS C2
KMSAGAG 0.0322 NS C3
WMNCHGAANC 0.0091 NS C4
GAGARRDDG 0.0375 NS C5
Protein-synthesis related motifs    
WKGGGCC <0.0001 <0.0001 C6
GGCCSAW <0.0001 <0.0001 C7
AAACYCNA 0.0375 0.0038 C8
WTBGGCY 0.0022 0.011 C9
GDNTTGKAM 0.0359 NS C10
AAGAAAA 0.0344 NS C11
  1. Nucleotide abbreviations: R; A or G, Y; C or T, W; A or T, S; G or C, M; A or C, K; G or T, H; A, C or T, B; G, C or T, V; G, A or C, D; G, A or TC, N; G, A, C or T.