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Table 9 Candidate σ32-dependent promoters upstream of heat-shock genes

From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Gene Operon Site Position* Score
Desulfovibrio vulgaris
206437 dnaJ-?-clpA gaTGAAt-[N 15 ]-CCCCtT -114 5.43
206776 ?-clp gTTGttg-[N 15 ]-CCCCgT -196 5.28
207035 rpoH aTTGAAA-[N 12 ]-aaCtAT -110 5.71
207448 groESL CaTaAAA-[N 12 ]-CCCCtT -239 5.23
Desulfovibrio desulfuricans
394616 clpP-clpX-lon CTTGAAc-[N 12 ]-CCCgAT -82 6.45
394617 clpX CTTGAAA-[N 14 ]-aCCgAT -136 6.94
394712 rpoH aTTGAAA-[N 12 ]-aaCtAT -122 5.71
395109 dnaJ-?-clpA CTTGAAA-[N 13 ]-gaCggT -81 5.16
   gTTGcAg-[N 12 ]-CCgCAT -57 5.28
395651 dnaK CTcGAAA-[N 14 ]-CCgCAg -71 5.17
Desulfotalea psychrophila
422219 groESL aTTGAAA-[N 13 ]-CCCCtT -201 6.33
   CTTGAtt-[N 13 ]-aCCtAT -134 5.98
423932 grpE-dnaK CaTGAAc-[N 12 ]-CtCCAT -232 5.34
   CTTGAcA-[N 13 ]-aCttAT -135 5.67
424328 dnaJ gTTtAcA-[N 14 ]-gCCCAT -113 5.62
   CTTGAct-[N 14 ]-CCCtAa -40 5.67
425016 ?-clpP-clpX-lon tTTGAtA-[N 11 ]-CCCaAg -123 5.33
Geobacter sulfurreducens
380319 dnaK-dnaJ gTTGAgg-[N 14 ]-CCCaAT -208 6.05
382089 ?-clpP-clpX-lon gTTcAAA-[N 12 ]-CCCCAT -283 6.65
382697 htpG CTTGAAA-[N 11 ]-CatgAT -75 5.85
Geobacter metallireducens
379288 groESL gaTGAAA-[N 12 ]-aCtCAT -45 5.79
379647 clpA CTTGAct-[N 14 ]-gCCtAT -58 5.72
379699 ?-clpP-clpX-lon gTTcAAA-[N 13 ]-CCCaAT -280 5.96
Desulfuromonas species
388073 clpP-clpX-lon CTTGAAg-[N 14 ]-gCCaAT -203 6.41
   aTTGAAg-[N 14 ]-aCCtAT -110 6.20
389722 groESL gTTGAgA-[N 14 ]-CCCCtT -163 5.91
  1. *Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence.