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Table 8 Candidate CIRCE sites for the heat shock-responsive regulator HrcA

From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Gene Operon Site Position* Score
Desulfovibrio vulgaris
207448 groESL cTgGCACTC-[N 9 ]-GAGTGCcAA -68 6.53
Desulfovibrio desulfuricans
394393 groESL TTgGCACTC-[N 9 ]-GAGTGCTAA -70 7.15
Geobacter sulfurreducens
380317 hrcA-grpE-dnaK-dnaJ TTAGCACTC-[N 9 ]-GAGTGCTAA -49 7.50
380945 rpoH TTAGCACTC-[N 9 ]-GAGTGCTAA -51 7.28
383663 groESL TTAGCACTC-[N 9 ]-GAGTGCTAA -81 7.45
Geobacter metallireducens
379288 groESL TTAGCACTC-[N 9 ]-GAGTGCTAA -80 7.41
379629 hrcA-grpE-dnaK-dnaJ TTAGCACTC-[N 9 ]-GAGTGCTAA -45 7.29
Desulfuromonas species
387711 hrcA-grpE-dnaK-dnaJ TTAGCACTC-[N 9 ]-GAGTGCTAA -85 7.06
389722 groESL TTAGCACTC-[N 9 ]-GAGTGCTAA -99 7.20
  1. *Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence.