Table 7 Candidate binding sites for the peroxide-responsive regulators PerR
From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria
Gene | Operon | Function | Site | Position* | Score |
|---|---|---|---|---|---|
Desulfovibrio vulgaris | |||||
207805 | rbr2 | Rubrerythrin | AATAGGAATCGTTCCTGTT | -46 | 5.97 |
208612 | perR-rbr-rdl | PerR-like repressor, rubrerythrin, rubredoxin | AtCAGTAATtGTTACTGgT | -36 | 5.50 |
207732 | ahpC | Alkyl hydroperoxide reductase C | cACAGGAATGATTCCTGTT | -116 | 5.40 |
206199 | ? | AtCAGTAATaGTTAtTGTT | -124 | 5.39 | |
Desulfovibrio desulfuricans | |||||
395420 | rbr2 | Rubrerythrin | AATAGGAATCGTTACTGaT | -76 | 5.91 |
395549 | ? | AATAaGAATtGTTACTATT | -134 | 5.45 | |
393457 | perR | PerR-like repressor | ttTAGGAATGGTTAtTATT | -41 | 5.23 |
Desulfotalea psychrophila | |||||
423938 | roo1-roo2 | Rubredoxin-oxygen oxidoreductase | GTTAATGATAATCATTAct | -203 | 6.25 |
425393 | perR | PerR-like repressor | GaTAATttTTATtATTAAC | -74 | 5.97 |
Geobacter sulfurreducens | |||||
383613 | perR-rbr*-roo | Rubredoxin-oxygen oxidoreductase | AaTGCAATAAAATACCAAT | -99 | 6 |
Geobacter metallireducens | |||||
378323 | perR2-rbr*-roo | Rubredoxin-oxygen oxidoreductase | ATTGCAATAAAgTACCAAc | -99 | 5.79 |
Desulfuromonas species | |||||
387528 | katG1 | Catalase | GGTcTTGACAATtCC | -75 | 5.55 |
387530 | perR31 | PerR-like repressor | GaTATTGACAAacCC | -96 | 5.29 |
Geobacter sulfurreducens | |||||
383124 | hsc-grx-ccpA-rbr | Cytochrome peroxidase, glutaredoxin, rubrerythrin | TTGCGCATTCcATtCGTAA | -32 | 5.84 |
Desulfuromonas species | |||||
390120 | perR1-rbr | PerR-like repressor, rubrerythrin | TTGCGCgTTAAAacaGTAA | -91 | 5.54 |