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Table 7 Candidate binding sites for the peroxide-responsive regulators PerR

From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Gene Operon Function Site Position* Score
Desulfovibrio vulgaris
207805 rbr2 Rubrerythrin AATAGGAATCGTTCCTGTT -46 5.97
208612 perR-rbr-rdl PerR-like repressor, rubrerythrin, rubredoxin AtCAGTAATtGTTACTGgT -36 5.50
207732 ahpC Alkyl hydroperoxide reductase C cACAGGAATGATTCCTGTT -116 5.40
206199   ? AtCAGTAATaGTTAtTGTT -124 5.39
Desulfovibrio desulfuricans
395420 rbr2 Rubrerythrin AATAGGAATCGTTACTGaT -76 5.91
395549   ? AATAaGAATtGTTACTATT -134 5.45
393457 perR PerR-like repressor ttTAGGAATGGTTAtTATT -41 5.23
Desulfotalea psychrophila
423938 roo1-roo2 Rubredoxin-oxygen oxidoreductase GTTAATGATAATCATTAct -203 6.25
425393 perR PerR-like repressor GaTAATttTTATtATTAAC -74 5.97
Geobacter sulfurreducens
383613 perR-rbr*-roo Rubredoxin-oxygen oxidoreductase AaTGCAATAAAATACCAAT -99 6
Geobacter metallireducens
378323 perR2-rbr*-roo Rubredoxin-oxygen oxidoreductase ATTGCAATAAAgTACCAAc -99 5.79
Desulfuromonas species
387528 katG1 Catalase  GGTcTTGACAATtCC -75 5.55
387530 perR31 PerR-like repressor  GaTATTGACAAacCC -96 5.29
Geobacter sulfurreducens
383124 hsc-grx-ccpA-rbr Cytochrome peroxidase, glutaredoxin, rubrerythrin TTGCGCATTCcATtCGTAA -32 5.84
Desulfuromonas species
390120 perR1-rbr PerR-like repressor, rubrerythrin TTGCGCgTTAAAacaGTAA -91 5.54
  1. *Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence.