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Table 4 Candidate binding sites for the nickel regulator NikR

From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Gene Operon Function Site Orientation Position* Score
Geobacter sulfurreducens PCA
381565 nik(MN)QO* Nickel transporter GTGTTAC-[N 14 ]-GTgACAC →← -183 5.00
Geobacter metallireducens
379930 nik(MN)QO* Nickel transporter GTGTTAC-[N 13 ]-GTAACAC →← -63 5.22
Desulfuromonas species
387207 nikQO* Nickel transporter GTGccAC-[N 13 ]-GTAACAC →← -41 4.67
Desulfovibrio vulgaris
206492 nikMQO* Nickel transporter GTGTTAt-[N 13 ]-GTAACAC →← -120 5.00
208275 nikK* Additional component of Ni transporter GTgACAC-[N 13 ]-GTGTaAC ←→ -84 4.49
Desulfovibrio desulfuricans
395510 nikKMLQO* Nickel transporter GTGTTAt-[N 13 ]-GTAACAC →← -104 5.00
394565 hydAB Periplasmic Fe-only hydrogenase GTaTTAC-[N 13 ]-GTAACAC →← -83 4.67
Desulfotalea psychrophila
422915 nikMLKQO* Nickel transporter GTAACAC-[N 13 ]-GTGTTAC ←→ -20 5.22
422176 422176-177 ? GTAACAC-[N 13 ]-GTGTTAC ←→ -197 5.22
    GTAACAC-[N 13 ]-GTGTTAC ←→ -124 5.22
  1. *Position relative to the start of translation.