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Table 3 Comparison of genome localization by retroelement lineage

From: Genomic neighborhoods for Arabidopsisretrotransposons: a role for targeted integration in the distribution of the Metaviridae

Hypotheses Test Group(s) tested p-values by chromosome Accept?
    1 2 3 4 5  
All families are randomly distributed according to a uniform distribution Uniform goodness of fit, 10,000 random permutations MV(F) 0.0000 0.0000 0.0000 0.0000 0.0000 No
   PV(F) 0.0000 0.0007 0.0000 0.0022 0.0464 No
   MV(S) 0.0000 0.0000 0.0000 0.0000 0.0000 No
   PV(S) 0.0000 0.0000 0.0000 0.0000 0.0000 No
   MV(R) 0.0000 0.0000 0.0000 0.0000 0.0000 No
   PV(R) 0.0000 0.0007 0.0000 0.0097 0.0000 No
   NL(R) 0.0000 0.0000 0.0000 0.0002 0.0000 No
Retroelement family distributions are organized similarly in the genome MRPP, 10,000 random permutations MV(FSR), PV(FSR), NL(R) 0.0000 0.0000 0.0000 0.0000 0.0000 No
   MV(FSR), PV(FSR) 0.0000 0.0000 0.0000 0.0000 0.0000 No
   MV(FSR), NL(R) 0.0000 0.0000 0.0000 0.0000 0.0000 No
   PV(FSR), NL(R) 0.3498 0.8326 0.0241 0.1468 0.1417 Yes
All Metaviridae sublineages have similar distributions MRPP, 10,000 random permutations MV Athila, Metavirus, Tat 0.2200 0.1365 0.5676 0.4174 0.2788 Yes
   MV Athila, Metavirus 0.1057 0.3010 0.2657 0.4526 0.4453 Yes
   MV Athila, Tat 0.1687 0.0970 0.7116 0.3773 0.2781 Yes
   MV Metavirus, Tat 0.4903 0.1268 0.7341 0.5753 0.2361 Yes
Metaviridae subtypes have similar distributions MRPP, 10,000 random permutations MV(FSR) 0.7742 0.1247 0.0000 0.7425 0.0659 Yes
   MV(FS) 0.4544 0.1357 0.0003 0.4435 0.7241 Yes
   MV(FR) 0.5184 0.9461 0.5750 0.5480 0.2135 Yes
   MV(SR) 0.9068 0.1339 0.0051 0.8194 0.0157 Yes
Pseudoviridae subtypes have similar distributions MRPP, 10,000 random permutations PV(FSR) 0.0509 0.2039 0.2199 0.0953 0.0379 Yes
   PV(FS) 0.2732 0.0853 0.2665 0.6567 0.0453 Yes
   PV(FR) 0.0136 0.5055 0.1185 0.0521 0.0281 Yes
   PV(SR) 0.0743 0.5604 0.2513 0.0307 0.3476 Yes
  1. MV, Metaviridae; PV, Pseudoviridae; NL, non-LTR retrotransposon; R, RT-only; S, solo LTR; F, full-length element. p-values < 0.05 are displayed in bold text.