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Table 1 Retroelement species used as BLAST probes

From: Genomic neighborhoods for Arabidopsisretrotransposons: a role for targeted integration in the distribution of the Metaviridae

Element GenBank accession number Host organism Family Genus Length (nucleotides) LTR identity (length in nucleotides)
Athila4-6 AF296831 Arabidopsis thaliana MV Metavirus 14,016 98.2 (1747)
Cer1 U15406 Caenorhabditis elegans MV Metavirus 8,865 100.0 (492)
Osvaldo AJ133521 Drosophila buzzatii MV Metavirus 9,045 99.9 (1196)
Sushi AF030881 Fugu rubripes MV Metavirus 5,645 91.0 (610)
Tf1 M38526 Schizosaccharomyces pombe MV Metavirus 4,941 100.0 (358)
Ty3 M23367 Saccharomyces cerevisiae MV Metavirus 5,428 100.0 (340)
Art1 Y08010 A. thaliana PV Pseudovirus 4,793 99.8 (439)
Copia M11240 Drosophila melanogaster PV Hemivirus 5,416 100.0 (276)
Endovir1-1 AY016208 A. thaliana PV Sirevirus 9,089 99.8 (548)
SIRE-1 AF053008 Glycine max PV Sirevirus 10,444 100.0 (2149)
Tca2 AF050215 Candida albicans PV Hemivirus 6,428 100.0 (280)
Tca5 AF065434 C. albicans PV Hemivirus 5,588 100.0 (685)
Jockey M22874 D. melanogaster NL - 5154 -
L1.2 M80343 Homo sapiens NL - 6,050 -
R1 X51968 D. melanogaster NL - 5356 -
R2 X51967 D. melanogaster NL - 3,607 -
Ta11 L47193 A. thaliana NL - 7,808 -
  1. MV, Metaviridae; PV, Pseudoviridae; NL, non-LTR retrotransposon.