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Table 1 Retroelement species used as BLAST probes

From: Genomic neighborhoods for Arabidopsisretrotransposons: a role for targeted integration in the distribution of the Metaviridae

Element

GenBank accession number

Host organism

Family

Genus

Length (nucleotides)

LTR identity (length in nucleotides)

Athila4-6

AF296831

Arabidopsis thaliana

MV

Metavirus

14,016

98.2 (1747)

Cer1

U15406

Caenorhabditis elegans

MV

Metavirus

8,865

100.0 (492)

Osvaldo

AJ133521

Drosophila buzzatii

MV

Metavirus

9,045

99.9 (1196)

Sushi

AF030881

Fugu rubripes

MV

Metavirus

5,645

91.0 (610)

Tf1

M38526

Schizosaccharomyces pombe

MV

Metavirus

4,941

100.0 (358)

Ty3

M23367

Saccharomyces cerevisiae

MV

Metavirus

5,428

100.0 (340)

Art1

Y08010

A. thaliana

PV

Pseudovirus

4,793

99.8 (439)

Copia

M11240

Drosophila melanogaster

PV

Hemivirus

5,416

100.0 (276)

Endovir1-1

AY016208

A. thaliana

PV

Sirevirus

9,089

99.8 (548)

SIRE-1

AF053008

Glycine max

PV

Sirevirus

10,444

100.0 (2149)

Tca2

AF050215

Candida albicans

PV

Hemivirus

6,428

100.0 (280)

Tca5

AF065434

C. albicans

PV

Hemivirus

5,588

100.0 (685)

Jockey

M22874

D. melanogaster

NL

-

5154

-

L1.2

M80343

Homo sapiens

NL

-

6,050

-

R1

X51968

D. melanogaster

NL

-

5356

-

R2

X51967

D. melanogaster

NL

-

3,607

-

Ta11

L47193

A. thaliana

NL

-

7,808

-

  1. MV, Metaviridae; PV, Pseudoviridae; NL, non-LTR retrotransposon.