TY - BOOK AU - Madigan, M. AU - Martinko, J. AU - Parker, J. PY - 2000 DA - 2000// TI - Brock Biology of Microorganisms PB - Prentice Hall CY - New Jersey ID - Madigan2000 ER - TY - BOOK AU - Lodish, H. AU - Baltimore, D. AU - Berk, A. AU - Zipursky, S. L. AU - Matsudaira, P. AU - Darnell, J. PY - 1995 DA - 1995// TI - Molecular Cell Biology PB - Scientific American Books CY - New York ID - Lodish1995 ER - TY - JOUR AU - Moreno-Hagelsieb, G. AU - Collado-Vides, J. PY - 2002 DA - 2002// TI - A powerful non-homology method for the prediction of operons in prokaryotes. JO - Bioinformatics VL - 18 Suppl 11 UR - https://doi.org/10.1093/bioinformatics/18.suppl_1.S329 DO - 10.1093/bioinformatics/18.suppl_1.S329 ID - Moreno-Hagelsieb2002 ER - TY - JOUR AU - Salgado, H. AU - Moreno-Haelsieb, G. AU - Smith, T. AU - Collado-Vides, J. PY - 2000 DA - 2000// TI - Operons in Escherichia coli: genomic analysis and predictions. JO - Proc Natl Acad Sci USA VL - 97 UR - https://doi.org/10.1073/pnas.110147297 DO - 10.1073/pnas.110147297 ID - Salgado2000 ER - TY - JOUR AU - Yada, T. AU - Nakao, M. AU - Totoki, Y. AU - Nakai, K. PY - 1999 DA - 1999// TI - Modeling and predicting transcriptional units of Escherichia coligenes using hidden Markov models. JO - Bioinformatics VL - 15 UR - https://doi.org/10.1093/bioinformatics/15.12.987 DO - 10.1093/bioinformatics/15.12.987 ID - Yada1999 ER - TY - JOUR AU - Salgado, H. AU - Santos-Zavaleta, A. AU - Gama-Castro, S. AU - Millan-Zarate, D. AU - Diaz-Peredo, E. AU - Sanchez-Solano, F. AU - Perez-Rueda, E. AU - Bonavides-Martinez, C. AU - Collado-Vides, J. PY - 2001 DA - 2001// TI - RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12. JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.1.72 DO - 10.1093/nar/29.1.72 ID - Salgado2001 ER - TY - JOUR AU - Overbeek, R. AU - Fonstein, M. AU - D'Souza, M. AU - Pusch, G. D. AU - Maltsev, N. PY - 1999 DA - 1999// TI - The use of gene clusters to infer functional coupling. JO - Proc Natl Acad Sci USA VL - 96 UR - https://doi.org/10.1073/pnas.96.6.2896 DO - 10.1073/pnas.96.6.2896 ID - Overbeek1999 ER - TY - JOUR AU - Ermolaeva, M. D. AU - White, O. AU - Salzberg, S. L. PY - 2001 DA - 2001// TI - Prediction of operons in microbial genomes. JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.5.1216 DO - 10.1093/nar/29.5.1216 ID - Ermolaeva2001 ER - TY - JOUR AU - Pellegrini, M. AU - Thompson, M. AU - Fierro, J. AU - Bowers, P. PY - 2001 DA - 2001// TI - Computational method to assign microbial genes to pathways. JO - J Cell Biochem Suppl VL - Suppl 37 UR - https://doi.org/10.1002/jcb.10071 DO - 10.1002/jcb.10071 ID - Pellegrini2001 ER - TY - JOUR AU - Marcotte, E. M. AU - Pellegrini, M. AU - Ho-Leung, N. AU - Rice, D. AU - Yeates, T. AU - Eisenberg, D. PY - 1999 DA - 1999// TI - Detecting protein function and protein-protein interactions from genome sequences. JO - Science VL - 285 UR - https://doi.org/10.1126/science.285.5428.751 DO - 10.1126/science.285.5428.751 ID - Marcotte1999 ER - TY - JOUR AU - Pellegrini, M. AU - Marcotte, E. M. AU - Thompson, M. J. AU - Eisenberg, D. AU - Yeates, T. O. PY - 1999 DA - 1999// TI - Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. JO - Proc Natl Acad Sci USA VL - 96 UR - https://doi.org/10.1073/pnas.96.8.4285 DO - 10.1073/pnas.96.8.4285 ID - Pellegrini1999 ER - TY - JOUR AU - Dandekar, T. AU - Snel, B. AU - Huynen, M. AU - Bork, P. PY - 1998 DA - 1998// TI - Conservation of gene order: a fingerprint of proteins that physically interact. JO - Trends Biochem Sci VL - 23 UR - https://doi.org/10.1016/S0968-0004(98)01274-2 DO - 10.1016/S0968-0004(98)01274-2 ID - Dandekar1998 ER - TY - JOUR AU - Marcotte, E. M. AU - Pellegrini, M. AU - Thompson, M. J. AU - Yeates, T. AU - Eisenberg, D. PY - 1999 DA - 1999// TI - A combined algorithm for genome-wide prediction of protein function. JO - Nature VL - 402 UR - https://doi.org/10.1038/47048 DO - 10.1038/47048 ID - Marcotte1999 ER - TY - JOUR AU - Moreno-Hagelsieb, G. AU - Trevino, V. AU - Perez-Rueda, E. AU - Smith, T. F. AU - Collado-Vides, J. PY - 2001 DA - 2001// TI - Transcription unit conservation in the three domains of life: a perspective from Escherichia coli. JO - Trends Genet VL - 17 UR - https://doi.org/10.1016/S0168-9525(01)02241-7 DO - 10.1016/S0168-9525(01)02241-7 ID - Moreno-Hagelsieb2001 ER - TY - JOUR AU - Yanai, I. AU - Wolf, Y. I. AU - Koonin, E. V. PY - 2002 DA - 2002// TI - Evolution of gene fusions: horizontal transfer versus independent events. JO - Genome Biol VL - 3 ID - Yanai2002 ER - TY - JOUR AU - Blattner, F. R. AU - Plunkett, G. AU - Bloch, C. A. AU - Perna, N. T. AU - Burland, V. AU - Riley, M. AU - Collado-Vides, J. AU - Glasner, J. D. AU - Rode, C. K. AU - Mayhew, G. F. PY - 1997 DA - 1997// TI - The complete genome sequence of Escherichia coliK-12. JO - Science VL - 277 UR - https://doi.org/10.1126/science.277.5331.1453 DO - 10.1126/science.277.5331.1453 ID - Blattner1997 ER - TY - JOUR AU - Skovgaard, M. AU - Jensen, L. J. AU - Brunak, S. AU - Ussery, D. AU - Krogh, A. PY - 2001 DA - 2001// TI - On the total number of genes and their length distribution in complete microbial genomes. JO - Trends Genet VL - 17 UR - https://doi.org/10.1016/S0168-9525(01)02372-1 DO - 10.1016/S0168-9525(01)02372-1 ID - Skovgaard2001 ER - TY - JOUR AU - Fultz, P. AU - Kemper, J. PY - 1981 DA - 1981// TI - Wild-type isopropylmalate isomerase in Salmonella typhimuriumis composed of two different subunits. JO - J Bacteriol VL - 148 ID - Fultz1981 ER - TY - JOUR AU - Tamakoshi, M. AU - Yamagishi, A. AU - Oshima, T. PY - 1998 DA - 1998// TI - The organization of the leuC, leuD and leuB genes of the extreme thermophile Thermus thermophilus. JO - Gene VL - 222 UR - https://doi.org/10.1016/S0378-1119(98)00482-X DO - 10.1016/S0378-1119(98)00482-X ID - Tamakoshi1998 ER - TY - BOOK AU - Hatfull, G. F. AU - Jacobs, W. R. PY - 2000 DA - 2000// TI - Molecular Genetics of Mycobacteria PB - ASM Press CY - Washington DC ID - Hatfull2000 ER - TY - JOUR AU - Harth, G. AU - Horwitz, M. A. PY - 1999 DA - 1999// TI - An inhibitor of exported Mycobacterium tuberculosisglutamine synthetase selectively blocks the growth of pathogenic mycobacteria in axenic culture and in human monocytes: extracellular proteins as potential novel drug targets. JO - J Exp Med VL - 189 UR - https://doi.org/10.1084/jem.189.9.1425 DO - 10.1084/jem.189.9.1425 ID - Harth1999 ER - TY - JOUR AU - Wolf, Y. AU - Rogozin, I. B. AU - Kondrashov, A. S. AU - Koonin, E. V. PY - 2001 DA - 2001// TI - Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. JO - Genome Res VL - 11 UR - https://doi.org/10.1101/gr.GR-1619R DO - 10.1101/gr.GR-1619R ID - Wolf2001 ER - TY - JOUR AU - Moreno-Hagelsieb, G. AU - Collado-Vides, J. PY - 2002 DA - 2002// TI - Operon conservation from the point of view of Escherichia coli, and inference of functional interdependence of gene products from genome context. JO - In Silico Biol VL - 2 ID - Moreno-Hagelsieb2002 ER - TY - JOUR AU - Zheng, Y. AU - Roberts, R. J. AU - Kasif, S. PY - 2002 DA - 2002// TI - Genomic functional annotation using co-evolution profiles of gene clusters. JO - Genome Biol VL - 3 UR - https://doi.org/10.1186/gb-2002-3-11-research0060 DO - 10.1186/gb-2002-3-11-research0060 ID - Zheng2002 ER - TY - STD TI - Computational Functional Linkages . [http://www.doe-mbi.ucla.edu/TB/computational/linkages] UR - http://www.doe-mbi.ucla.edu/TB/computational/linkages ID - ref25 ER - TY - STD TI - Pasteur Institute TubercuList. [http://genolist.pasteur.fr/TubercuList/index.html] UR - http://genolist.pasteur.fr/TubercuList/index.html ID - ref26 ER - TY - STD TI - The Sanger Institute: M. tuberculosis. [http://www.sanger.ac.uk/Projects/M_tuberculosis/Gene_list/] UR - http://www.sanger.ac.uk/Projects/M_tuberculosis/Gene_list/ ID - ref27 ER - TY - STD TI - SWISS-PROT. [http://www.expasy.org/sprot/sprot_details.html] UR - http://www.expasy.org/sprot/sprot_details.html ID - ref28 ER -