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Table 3 Kishino-Hasegawa test for the analyzed cases of apparent xenologous gene displacement in situ

From: Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ

Tree*

Diff lnL†

S.E.‡

RELL-BP§

L19 original

0.0

ML

0.8004

1R2

-12.6

7.7

0.0480

3R4

-6.6

6.6

0.1516

RuvB original

0.00

ML

0.9631

1R2

-27.1

15.4

0.0369

UppS original

0.00

ML

0.9883

1R2

-29.3

12.8

0.0117

NuoH original

0.00

ML

0.8336

1R2

-7.4

7.9

0.1664

RfbA original

0.00

ML

1.0000

1R2

-151.1

25.0

0.0000

RfbD original

0.00

ML

0.9005

1R2

-17.0

13.3

0.0995

LeuA original

0.00

ML

1.0000

1R2

-150.2

25.8

0.0000

3R4

-418.6

31.5

0.0000

5R6

-245.0

27.8

0.0000

LeuB original

0.00

ML

0.9847

1R2

-52.9

18.1

0.0007

3R4

-31.7

14.9

0.0146

LeuC original

0.00

ML

1.0000

1R2

-302.7

31.6

0.0000

3R4

-439.1

32.1

0.0000

LeuD original

0.00

ML

1.0000

1R2

-66.6

17.2

0.0000

3R4

-76.7

16.8

0.0000

  1. *The numbers refer to local rearrangements of the tree as indicated on the corresponding figures. †Difference of the Log-likelihoods relative to the best tree. ‡Standard error of Diff lnL. §Bootstrap probability of the given tree calculated using the RELL method (Resampling of Estimated Log-likelihoods).