From: THoR: a tool for domain discovery and curation of multiple alignments
Program
Location
Perl modules
http://search.cpan.org/
Blast 2
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/
Hmmer-2.1.1
ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/
Chroma
http://www.lg.ndirect.co.uk/chroma/
Apache 1.3.x
http://httpd.apache.org/
PHP4
http://www.php.net/downloads.php
The NCBI nr database
ftp://ftp.ncbi.nih.gov/blast/db/nr.tar.gz
THoR downloads
http://smart.ox.ac.uk/thor/