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Table 3 Ranking based on the leukemia data [16]

From: Statistical methods for ranking differentially expressed genes

Gene

t-test rank

SAM rank

samroc rank

Bayes rank

M55150

7,052

7,048

6,749.5

5,711

M21551

4,918

4,995

6,203

6,686

M81933

6,204

6,161

5,747

5,094

U63289

5,719

5,731

6697

6,915

M11147

6,878

6,954

7086

7,087

U41767

6,391

6,557

5,719

4,726

M16038

1,152

1,212

2,232

4,044

U50136

7,055

7,047

7,089

7,026

M13485

6,257

6,237

6,849

6,994

D49950

6,286

6,500

6,671

6,488

M80254

4,303

4,374

5,274

5,807

U51336

6,466

6,554

6,406

5,832

X95735

7,047

7,054

7,112

7,115

M62762

7,094

7,118

6,939

5,820

L08177

7,066

7,119

7,126

7,120

Z30644

1,655

1,720

2,458

3,495

U12471

6,905

6,800

6,096

5,000

M21904

6,136

6,118

6,477

6,428

U05681

5,814

5,725

5,915

5,702

U77604

6,825

7,017

7,105

7,113

D50310

4,507

4,744

5,967

6,534

Z48501

7,008

7,030

7,067

6,941

M81758

6,303

6,331

6,918

7,033

U82759

6,266

6,386

6,106

5,437

M95678

6,836

6,899

7,006

6,908

X74262

7,061

7,085

7,119

7,121

M91432

6,797

6,959

7,050

6,997

HG1612-HT1612

6,733

6,668

6,504

5,883

M31211

6,780

6,813

5,610

4,375

X59417

6,382

6,707

7,008

7,061

Z69881

7,100

7,124

6,860

5,476

U22376

7,068

7,100

7,106

7,007

L07758

7,091

7,114

7,127

7,128

L47738

6,997

6,974

6,944

6,520

U32944

5,485

5,908

6,751

6,953

U26266

6,735

6,966

7,091

7,101

M92287

6,812

6,969

7,070

7,054

U05259

6,987

7,003

7,074

7,029

M65214

6,947

7,058

7,115

7,119

L13278

7,086

7,113

7,120

7,103

M31523

6,963

7,035

6,968

6,454

M77142

6,789

6,929

7,075

7,090

U09087

6,909

6,987

7,021

6,809

D38073

6,698

6,738

6,916

6,815

U38846

6,593

6,827

7,062

7,099

J05243

7,129

7,128

7,096

6,539

D26156

6,962

7,012

7,046

6,874

X15414

6,608

6,790

6,117

5,023

S50223

6809

6,861

6,629

5,886

X74801

6,726

6,895

7,032

6,996

Average

6,367.8

6,443.88

6,550.51

6,371.36

  1. Results for the leukemia data using only the first four samples from ALL and AML. The higher the average rank the better the method has been at identifying the probe sets that are changed.