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Table 3 Reference mitochondrial control-region sequences obtained from EMBL database and used in the phylogenetic analysis

From: Ancient origin and evolution of the Indian wolf: evidence from mitochondrial DNA typing of wolves from Trans-Himalayan region and Pennisular India

Sample Code

Species

Subspecies

Country/Conttinent

EMBL AccNo

D-loop (bp)

Haplotypea

Reference

D-loop region sequenced

1-lu1

C. lupus

lupus

Yugosolavia

Europe

AB007372

672

 

[9]

Complete 5'-CR-I

2-lu2

C. lupus

lupus

Yugosolavia

Europe

AB007373

672

 

[9]

Complete 5'-CR-I

3-p1

C. lupus

pallipes

Afganisathan

Asia

AB007374

672

 

[9]

Complete 5'-CR-I

4-ch1

C. lupus

chanco

Mongol, China

Asia

AB007375

673

 

[9]

Complete 5'-CR-I

5-ch2

C. lupus

chanco

Mongol, China

Asia

AB007376

673

 

[9]

Complete 5'-CR-I

6-ch3

C. lupus

chanco

Mongol, China

Asia

AB007377

673

 

[9]

Complete 5'-CR-I

7-ch4

C. lupus

chanco

Mongol, China

Asia

AB007378

673

 

[9]

Complete 5'-CR-I

8-ch5

C. lupus

chanco

Mongol, China

Asia

AB007379

673

 

[9]

Complete 5'-CR-I

9-Wo11

C. lupus

crassodon

Canada

N. America

AF098125

707

Wo-11

[45]*

Complete 5'-CR-I

10-Wo10

C. lupus

crassodon

Canada

N. America

AF098124

707

Wo-10

[45]*

Complete 5'-CR-I

11-Wo9

C. lupus

crassodon

Canada

N. America

AF098123

707

Wo-9

[45]*

Complete 5'-CR-I

12-Wo4

C. lupus

columbianus

Canada

N. America

AF098118

707

Wo-4

[45]*

Complete 5'-CR-I

13-Wo5

C. lupus

columbianus

Canada

N. America

AF098119

707

Wo-5

[45]*

Complete 5'-CR-I

14-Wo6

C. lupus

columbianus

Canada

N. America

AF098120

707

Wo-6

[45]*

Complete 5'-CR-I

15-Wo7

C. lupus

columbianus

Canada

N. America

AF098121

707

Wo-7

[45]*

Complete 5'-CR-I

16-Wo8

C. lupus

columbianus

Canada

N. America

AF098122

707

Wo-8

[45]*

Complete 5'-CR-I

17-Wo2

C. lupus

lupus

Canada

N. America

AF098116

707

Wo-2

[45]*

Complete 5'-CR-I

18-Wo3

C. lupus

lupus

Canada

N. America

AF098117

707

Wo-3

[45]*

Complete 5'-CR-I

19-Wo1

C. lupus

tundrarum

Canada

N. America

AF098115

707

Wo-1

[45]*

Complete 5'-CR-I

20-W27

C. lupus

 

China

Asia

AF008135

713

W-27

[18]

Complete 5'-CR-I

21-W 6

C. lupus

 

Romania

Europe

AF008136

712

W-6

[18]

Complete 5'-CR-I

22-W 1

C. lupus

 

Spain

Europe

AF008137

712

W-1

[18]

Complete 5'-CR-I

23-W 4

C. lupus

 

France/Italy

Europe

AF008138

712

W-4

[18]

Complete 5'-CR-I

24-W 5

C. lupus

 

Greece/Romania

Europe

AF008139

712

W-5

[18]

Complete 5'-CR-I

25-W12

C. lupus

 

India

Asia

AF008140

712

W-12

[18]

Complete 5'-CR-I

26-W15

C. lupus

 

SaudiArabia

Asia

AF008141

713

W-15

[18]

Complete 5'-CR-I

27-W14

C. lupus

 

SaudiArabia/China

Asia

AF008142

712

W-14

[18]

Complete 5'-CR-I

28-w 1

C. lupus

 

Italy-East European

Europe

AF115687

542

w-1

[42]

Most of 5'-CR-I

29-w 2

C. lupus

 

Italy-East European

Europe

AF115688

542

w-2

[42]

Most of 5'-CR-I

30-w 3

C. lupus

 

Italy-East European

Europe

AF115689

542

w-3

[42]

Most of 5'-CR-I

31-w 4

C. lupus

 

Italy-East European

Europe

AF115690

542

w-4

[42]

Most of 5'-CR-I

32-w 5

C. lupus

 

Italy-East European

Europe

AF115691

542

w-5

[42]

Most of 5'-CR-I

33-w 7

C. lupus

 

Italy-East European

Europe

AF115692

542

w-7

[42]

Most of 5'-CR-I

34-w 8

C. lupus

 

Italy-East European

Europe

AF115693

542

w-8

[42]

Most of 5'-CR-I

35-w 9

C. lupus

 

Italy-East European

Europe

AF115694

542

w-9

[42]

Most of 5'-CR-I

36-w 10

C. lupus

 

Italy-East European

Europe

AF115695

542

w-10

[42]

Most of 5'-CR-I

37-w 11

C. lupus

 

Italy-East European

Europe

AF115696

542

w-11

[42]

Most of 5'-CR-I

38-w 12

C. lupus

 

Italy-East European

Europe

AF115697

542

w-12

[42]

Most of 5'-CR-I

39-w 13

C. lupus

 

Italy-East European

Europe

AF115698

542

w-13

[42]

Most of 5'-CR-I

40-w 14

C. lupus

 

Italy-East European

Europe

AF115699

542

w-14

[42]

Most of 5'-CR-I

41-w 15

C. lupus

 

Italy-East European

Europe

AF115700

542

w-15

[42]

Most of 5'-CR-I

42-w 16

C. lupus

 

Italy-East European

Europe

AF115701

542

w-16

[42]

Most of 5'-CR-I

43-w 19

C. lupus

 

Italy-East European

Europe

AF115702

542

w-19

[42]

Most of 5'-CR-I

44-w 20

C. lupus

 

Italy-East European

Europe

AF115703

542

w-20

[42]

Most of 5'-CR-I

45-Do9

C. familiaris

 

Dog

  

707

Do-9

 

Complete 5'-CR-I

46-DogABO

C. familiaris

 

Dog

 

AB048590

737

  

Complete 5'-CR-I

47

ulpus vulpus

 

Red fox

Japan

D-83639

666

 

[43]

Complete 5'-CR-I

48

procyonoides

 

Raccoon dog

Japan

D-83614

667

 

[43]

Complete 5'-CR-I

49-W1

C. lupus

 

France/Italy/Spain

Europe

AF338803

342

W-1

[46]*

Part of 5'-CR-I

50-W2

C. lupus

 

France/Italy/Spain

Europe

AF338804

342

W-2

[46]*

Part of 5'-CR-I

51-W3

C. lupus

 

France/Italy/Spain

Europe

AF338805

342

W-3

[46]*

Part of 5'-CR-I

52-W4

C. lupus

 

Croatia

Europe

AF338806

342

W-4

[46]*

Part of 5'-CR-I

53-W5

C. lupus

 

Croatia

Europe

AF338807

342

W-5

[46]*

Part of 5'-CR-I

54-W6

C. lupus

 

Portugal

Europe

AF338808

342

W-6

[46]*

Part of 5'-CR-I

55-W7

C. lupus

 

Spain

Europe

AF338809

342

W-7

[46]*

Part of 5'-CR-I

56-W8

C. lupus

 

Romania

Europe

AF338810

342

W-8

[46]*

Part of 5'-CR-I

57-W9

C. lupus

 

Poland

Europe

AF338811

342

W-9

[46]*

Part of 5'-CR-I

58-W10

C. lupus

 

Spain

Europe

AF338812

342

W-10

[46]*

Part of 5'-CR-I

59-W2

C. lupus

 

Polland-Belarus

Europe

AF344300

257

W-2

[47]*

Part of 5'-CR-I

60-W3

C. lupus

 

Polland-Belarus

Europe

AF344301

257

W-3

[47]*

Part of 5'-CR-I

61-W4

C. lupus

 

Polland-Belarus

Europe

AF344302

257

W-4

[47]*

Part of 5'-CR-I

62-p3

C. lupus

 

USA

N. America

AF020699

402

 

[44]

Part of 5'-CR-I

63-W27

C. lupus

 

China

Asia

AF008160

305

W-27

[18]

3'-CR-II

64-W6a

C. lupus

 

Romania/Russia

Eurasia

AF008161

304

W-6a

[18]

3'-CR-II

65-W 1

C. lupus

 

Portugal/Spain

Europe

AF008162

304

W-1

[18]

3'-CR-II

66-W 4

C. lupus

 

France/Italy

Europe

AF008163

300

W-4

[18]

3'-CR-II

67-W 5

C. lupus

 

Greece/Romania

Europe

AF008164

272

W-5

[18]

3'-CR-II

68-W12

C. lupus

 

India

Asia

AF008165

304

W-12

[18]

3'-CR-II

69-W15

C. lupus

 

SausiArabia

Asia

AF008166

304

W-15

[18]

3'-CR-II

70-W14

C. lupus

 

SausiArabia/China

Asia

AF008167

304

W-14

[18]

3'-CR-II

71-w2

C. lupus

 

Croatia/Portugal/Swede

Europe

AF005296

257

w-2

[18]

Part of 5'-CR-I

72-w3

C. lupus

 

Poland/Spain

Europe

AF005297

257

w-3

[18]

Part of 5'-CR-I

73-w7

C. lupus

 

Bulgaria/SaudiArabia

Eurasia

AF005298

257

w-7

[18]

Part of 5'-CR-I

74-w8

C. lupus

 

Greece

Europe

AF005299

257

w-8

[18]

Part of 5'-CR-I

75-w9

C. lupus

 

Greece

Europe

AF005300

257

w-9

[18]

Part of 5'-CR-I

76-w10

C. lupus

 

Estonia/Finland/Russia/Spain

AF005301

257

w-10

[18]

Part of 5'-CR-I

77-w11

C. lupus

 

Israel

Asia

AF005302

257

w-11

[18]

Part of 5'-CR-I

78-w16

C. lupus

 

Iran

Asia

AF005303

257

w-16

[18]

Part of 5'-CR-I

79-w17

C. lupus

 

Iran

Asia

AF005304

257

w-17

[18]

Part of 5'-CR-I

80-w13

C. lupus

 

SaudiArabia

Asia

AF005305

257

w-13

[18]

Part of 5'-CR-I

81-w18

C. lupus

 

Afganisathan

Asia

AF005306

257

w-18

[18]

Part of 5'-CR-I

82-w19

C. lupus

 

China

Asia

AF005307

257

w-19

[18]

Part of 5'-CR-I

83-w20

C. lupus

 

Alaska

N. America

AF005308

257

w-20

[18]

Part of 5'-CR-I

84-w22

C. lupus

 

Alaska/Alberta/Montana/N-W territories

AF005309

257

w-22

[18]

Part of 5'-CR-I

85-w21

C. lupus

 

Yukon

Europe

AF005310

258

w-21

[18]

Part of 5'-CR-I

86-w23

C. lupus

 

Yukon

Europe

AF005311

258

w-23

[18]

Part of 5'-CR-I

87-w24

C. lupus

 

Yukon

Europe

AF005312

258

w-24

[18]

Part of 5'-CR-I

88-w25

C. lupus

 

Mexico

N. America

AF005313

258

w-25

[18]

Part of 5'-CR-I

89-w26

C. lupus

 

Russia

Eurasia

AF005314

257

w-26

[18]

Part of 5'-CR-I

90-lu3

C. lupus

 

Russia

Eurasia

AF202894

360

 

[48]*

Repetitive region

  1. a : Haplotype code given in the reference by the respective authors * : Unpublished reference; details taken from corresponding EMBL entries