Table 2 Poly(A) tails of L1s
From: Identifying related L1 retrotransposons by analyzing 3' transduced sequences
Family id | L1 id (Chrom_ number) | Polyadenylation signal* | Alignment ends in A-rich stretch*,†| Tail |
|---|---|---|---|---|
1 | 2_4643 | x | x | AAAAAAATAAATAAA |
| Â | Un_953 | Â | Â | Â |
| Â | Un_964 | Â | Â | Â |
2 | 2_7114 | x | x | AAAAAAAAAAATAAATAAATAAATAAAA |
| Â | 10_7718 | Â | Â | Â |
| Â | 1_8235 | Â | Â | AAAATAAAAAAATAAA |
| Â | 1_8446 | Â | Â | AAAAAAATAAATAAATAAAAAATAAATAAA |
| Â | 4_17987 | Â | Â | AAAAAAAAAAA |
3 | 2_17349 | aataaa | x | AAAAAAAAAAAAAAAAGAAAAA |
| Â | 8_15027 | Â | Â | Â |
4 | 2_22677 | aataaa | x | ACAAAAAAGAAAAAAA |
| Â | 12_173 | Â | Â | AAAAAATAAATGAATAAA |
5 | 2_25220 | attaaa | x | AAAATAATTAAAACATAAAAAAAAAAA |
| Â | X_13522 | Â | Â | AAAAAAAAAATTAAAAAAAAAAAA |
6 | 2_25509 | x | x | AAAAAAAAAAAAAAAAAA |
| Â | 7_87 | Â | Â | AAAAAAAAAAAAAA |
7 | 3_1865 | attaaa | A(19) | AAAAAAAAACAAAGAACAAAAAAAAA |
| Â | 15_6107 | Â | Â | AAAAAAAAAAAAAAAAAAA |
| Â | 1_1921 | Â | Â | Â |
8 | 3_9516 | x | short A(8) | AAAAAAAGAAAAAGA |
| Â | 3_8906 | Â | Â | Â |
9 | 3_21623 | x | A(39) | AATAAAAATAAAAAAAGAAAA |
| Â | 3_21596 | Â | Â | Â |
10 | 5_11657 | x | x | AAAAAAATGA |
| Â | 7_871 | Â | Â | Â |
11 | 6_4059 | x | A(10) | AAAGTATAAAAAAA |
| Â | 2_23164 | Â | Â | ATAATAAATTAAAAAAAAAGAAA |
| Â | 9_9971 | Â | Â | ATAATAAATTAAAAAAAA |
12 | 6_5918 | aataaa | x | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Â | 4_13249 | Â | Â | AGAAGCAAAAAAAAAAAAAAAAAAAAAAAA |
13 | 9_6571 | x | short A(8) | AAAAATAAATAAATAAACAGATAAATAAATAAATAAATAA |
| Â | 7_6559 | Â | Â | Â |
14 | 9_10645 | aataaa | x | ACAAATAAAAAACAAACAAACAAAAA |
| Â | 11_9728 | Â | Â | AAAAAAAAAAAAAAAAAAAAA |
15 | 12_12007 | aataaa | A(6) | AATAAATTAAAAAACTAAAAAAAAAAAAAAAAAGA |
| Â | 4_15129 | Â | Â | Â |
16 | 13_482 | x | x | AAAGAAAACAAAAAA |
| Â | X_17433 | Â | Â | Â |
17 | 13_5911 | aataaa | A(12) | AAAAAAAAAA |
| Â | 6_6642 | Â | Â | Â |
18 | 13_10012 | x | short | AGAAAAAAAAAAAAGA |
| Â | 22_2286 | Â | Â | AAAAAAAACAA |
| Â | Y_1832 | Â | Â | AAAAAAAACAA |
| Â | 22_2857 | Â | Â | Â |
19 | 14_785 | x | A(21) | AAAAAAATAAATAAATAAGAAAAACATTA |
| Â | 13_6443 | Â | Â | Â |
20 | 14_2523 | attaaa | short | AAAATGAAAAAATACTAAAAAAAAAA |
| Â | 8_9380 | Â | Â | AACAGAGAAAAAAAAAAAAAA |
21 | 15_2689 | aataaa | A(35) | AAAAAATAAAAAATAAAAAATAAAAAATAATTAAAAAAAAGAAAATTAAAAAAAAAAGAAAA |
| Â | 2_25800 | Â | Â | AAAAAATAAAATAAAATAAAAATAAATAAAAATAAATTAAAAAAA |
| Â | 18_6857 | Â | Â | Â |
| Â | 18_6870 | Â | Â | Â |
22 | 16_1147 | aataaa | A(10) | ACAGGAAAAAAA |
| Â | 5_5158 | Â | Â | Â |
23 | 19_4956 | x | A(11) | AAAAATAAATAAATAAA |
| Â | 19_4990 | Â | Â | Â |
24 | 20_1331 | x | A(23) | AAAAAAAAAAAAAAAAAAAAAAAA |
| Â | Y_3590 | Â | Â | Â |
25 | X_11447 | x | x | AAAAAAAAAAA |
|  | 5_7396‡ |  |  | AACCAGAAAAAAAAAAAA |
|  | 7_12643‡ |  |  | AACCAGAAAAAAAAAA |
| Â | 18_6119 | Â | Â | Â |
| Â | 6_17369 | Â | Â | Â |