Types of sequence supported | ||||||||
---|---|---|---|---|---|---|---|---|
Referenced sequence | Protein | mRNA | ESTs | Statistics | Alignment tool | Literature search | Organisms | |
SpliceNest | Genomic sequence | Yes | Yes | 90,000 EST clusters | REPuter [23] | Human and Arabidopsis | ||
PALS db (Release 2) | Message RNA | Yes | Yes | 19,936 (human) | BLAST | Human and mouse | ||
16,615 (mouse) | ||||||||
UniGene clusters | ||||||||
SpliceDB | Genomic sequence | Yes | Yes | 43,337 splice site pairs | BLAST | Yes | Mammalian | |
AsMmDB (version 1.0) | Genomic sequence | Yes | Yes | 1,563 alternative splicing genes | FASTA | Yes | Human, mouse and rat | |
ASDB (version 2.1) | Yes | 1,922 proteins | Yes | |||||
HASDB | Genomic sequence | Yes | Yes | 6,201 UniGene clusters | BLAST | Human | ||
BLAT server | User-submitted sequence | Yes | Yes | Yes | BLAT | Human and mouse | ||
ProSplicer | Genomic sequence | Yes | Yes | Yes | 21,786 genes | BLAST (protein) SIM4 (mRNA and ESTs) | Human |