| | |
Types of sequence supported
| | | | |
|---|
| |
Referenced sequence
|
Protein
|
mRNA
|
ESTs
|
Statistics
|
Alignment tool
|
Literature search
|
Organisms
|
|---|
|
SpliceNest
|
Genomic sequence
| |
Yes
|
Yes
|
90,000 EST clusters
|
REPuter [23]
| |
Human and Arabidopsis
|
|
PALS db (Release 2)
|
Message RNA
| |
Yes
|
Yes
|
19,936 (human)
|
BLAST
| |
Human and mouse
|
| | | | | |
16,615 (mouse)
| | | |
| | | | | |
UniGene clusters
| | | |
|
SpliceDB
|
Genomic sequence
| |
Yes
|
Yes
|
43,337 splice site pairs
|
BLAST
|
Yes
|
Mammalian
|
|
AsMmDB (version 1.0)
|
Genomic sequence
| |
Yes
|
Yes
|
1,563 alternative splicing genes
|
FASTA
|
Yes
|
Human, mouse and rat
|
|
ASDB (version 2.1)
| |
Yes
| | |
1,922 proteins
| |
Yes
| |
|
HASDB
|
Genomic sequence
| |
Yes
|
Yes
|
6,201 UniGene clusters
|
BLAST
| |
Human
|
|
BLAT server
|
User-submitted sequence
|
Yes
|
Yes
|
Yes
| |
BLAT
| |
Human and mouse
|
|
ProSplicer
|
Genomic sequence
|
Yes
|
Yes
|
Yes
|
21,786 genes
|
BLAST (protein) SIM4 (mRNA and ESTs)
| |
Human
|
