|  | Types of sequence supported |  |  |  |  | ||
---|---|---|---|---|---|---|---|---|
 | Referenced sequence | Protein | mRNA | ESTs | Statistics | Alignment tool | Literature search | Organisms |
SpliceNest | Genomic sequence | Â | Yes | Yes | 90,000 EST clusters | REPuter [23] | Â | Human and Arabidopsis |
PALS db (Release 2) | Message RNA | Â | Yes | Yes | 19,936 (human) | BLAST | Â | Human and mouse |
 |  |  |  |  | 16,615 (mouse) |  |  |  |
 |  |  |  |  | UniGene clusters |  |  |  |
SpliceDB | Genomic sequence | Â | Yes | Yes | 43,337 splice site pairs | BLAST | Yes | Mammalian |
AsMmDB (version 1.0) | Genomic sequence | Â | Yes | Yes | 1,563 alternative splicing genes | FASTA | Yes | Human, mouse and rat |
ASDB (version 2.1) | Â | Yes | Â | Â | 1,922 proteins | Â | Yes | Â |
HASDB | Genomic sequence | Â | Yes | Yes | 6,201 UniGene clusters | BLAST | Â | Human |
BLAT server | User-submitted sequence | Yes | Yes | Yes | Â | BLAT | Â | Human and mouse |
ProSplicer | Genomic sequence | Yes | Yes | Yes | 21,786 genes | BLAST (protein) SIM4 (mRNA and ESTs) | Â | Human |