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Table 1 Two-by-two contingency table for flagged and unflagged genes in a GO category

From: GoMiner: a resource for biological interpretation of genomic and proteomic data

 

Flagged genes

Non-flagged genes

Total

In category

n f

n - nf

n

Not in category

Nf - nf

(N - n) - (Nf - nf)

N - n

Total

N f

N - Nf

N

  1. nf is the number of flagged genes in the category, n is the total number of genes in the category, Nf is the number of flagged genes on the microarray, and N is the total number of genes on the microarray. All numbers are those obtained after dereplicating multiple instances of the same gene.
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Genome Biology

ISSN: 1474-760X

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