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Table 1 Two-by-two contingency table for flagged and unflagged genes in a GO category

From: GoMiner: a resource for biological interpretation of genomic and proteomic data

  Flagged genes Non-flagged genes Total
In category n f n - nf n
Not in category Nf - nf (N - n) - (Nf - nf) N - n
Total N f N - Nf N
  1. nf is the number of flagged genes in the category, n is the total number of genes in the category, Nf is the number of flagged genes on the microarray, and N is the total number of genes on the microarray. All numbers are those obtained after dereplicating multiple instances of the same gene.