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Table 4 KEGG biochemical pathway mappings for M. incognita clusters

From: Analysis and functional classification of transcripts from the nematode Meloidogyne incognita

KEGG categories represented

Clusters

Enzymes

1.1 Glycolysis/gluconeogenesis

13

10

1.2 Citrate cycle (TCA cycle)

11

7

1.3 Pentose phosphate cycle

8

6

1.4 Pentose and glucuronate interconversions

3

3

1.5 Fructose and mannose metabolism

8

6

1.6 Galactose metabolism

6

5

1.7 Ascorbate and aldarate metabolism

6

3

1.8 Pyruvate metabolism

18

9

1.9 Glyoxylate and dicarboxylate metabolism

8

5

1.10 Propanoate metabolism

11

6

1.11 Butanoate metabolism

11

6

2.1 Oxidative phosphorylation

12

3

3.1 Fatty acid biosynthesis (path 1)

1

1

3.2 Fatty acid biosynthesis (path 2)

5

3

3.3 Fatty acid metabolism

20

7

3.4 Synthesis and degradation of ketone bodies

2

1

3.5 Sterol biosynthesis

1

1

3.6 Bile acid biosynthesis

6

3

3.8 Androgen and estrogen metabolism

3

3

4.1 Purine metabolism

6

5

4.2 Pyrimidine metabolism

9

7

4.3 Nucleotide sugars metabolism

5

4

5.1 Glutamate metabolism

4

4

5.2 Alanine and aspartate metabolism

3

2

5.3 Glycine, serine and threonine metabolism

6

5

5.4 Methionine metabolism

3

2

5.5 Cysteine metabolism

3

2

5.6 Valine, leucine and isoleucine degradation

9

5

5.7 Valine, leucine and isoleucine biosynthesis

1

1

5.8 Lysine biosynthesis

1

1

5.9 Lysine degradation

13

8

5.10 Arginine and proline metabolism

14

8

5.11 Histidine metabolism

6

3

5.12 Tyrosine metabolism

8

5

5.13 Phenylalanine metabolism

8

6

5.14 Tryptophan metabolism

22

8

5.15 Phenylalanine/tyrosine/tryptophan biosynthesis

2

2

5.16 Urea cycle and metabolism of amino groups

1

1

6.1 beta-Alanine metabolism

8

3

6.3 Aminophosphonate metabolism

1

1

6.4 Selenoamino acid metabolism

5

3

6.6 D-Glutamine and D-glutamate metabolism

1

1

6.7 D-Arginine and D-ornithine metabolism

4

3

6.9 Glutathione metabolism

8

4

7.1 Starch and sucrose metabolism

9

5

7.2 Glycoprotein biosynthesis

2

1

7.4 Aminosugars metabolism

3

3

8.1 Glycerolipid metabolism

9

4

8.2 Inositol phosphate metabolism

1

1

8.5 Sphingoglycolipid metabolism

3

3

8.8 Prostaglandin and leukotriene metabolism

2

1

9.3 Vitamin B6 metabolism

1

1

9.4 Nicotinate and nicotinamide metabolism

13

2

9.5 Pantothenate and CoA biosynthesis

3

2

9.8 One carbon pool by folate

3

3

9.11 Ubiquinone biosynthesis

8

4

10.20 Tetrachloroethene degradation

0

0

10.21 Styrene degradation

0

0

12.3 Aminoacyl-tRNA biosynthesis

0

0

KEGG categories not represented

  

2.5 Methane metabolism

0

0

2.6 Nitrogen metabolism

0

0

2.7 Sulfur metabolism

0

0

6.2 Taurine and hypotaurine metabolism

0

0

6.5 Cyanoamino acid metabolism

0

0

7.3 Glycoprotein degradation

0

0

7.7 Glycosaminoglycan degradation

0

0

8.3 Sphingophospholipid biosynthesis

0

0

8.4 Phospholipid degradation

0

0

9.2 Riboflavin metabolism

0

0

9.7 Folate biosynthesis

0

0

9.10 Porphyrin and chlorophyll metabolism

0

0

10.2 Flavonoids, stilbene and lignin biosynthesis

0

0

10.3 Alkaloid biosynthesis I

0

0

10.4 Alkaloid biosynthesis II

0

0

10.6 Streptomycin biosynthesis

0

0

10.7 Erythromycin biosynthesis

0

0

10.14 Gamma-hexachlorocyclohexane degradation

0

0

10.18 1,2-Dichloroethane degradation

0

0

Categories eliminated

  

2.2 Photosynthesis

Plants

 

2.3 Carbon fixation

Plants

 

2.4 Reductive carboxylate cycle (CO2 fixation)

Plants

 

7.6 Peptidoglycan biosynthesis

Bacterial cell wall

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