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Table 1 The most abundantly represented transcripts in the M. incognita cDNA library

From: Analysis and functional classification of transcripts from the nematode Meloidogyne incognita

   

Non-redundant GenBank

 
 

Cluster

ESTs

Best identity descriptor

Accession SW/TR*

E-value

C. elegans gene Wormpep

1

MI00951.cl

77

C. elegans UNC-87, thin filament associated

P37806

5e-87

F08B6.4

2

MI00033.cl

64

C. elegans MLC-1, myosin light chain

P19625

3e-74

C36E6.3

3

MI00502.cl

64

G. pallida SEC-2, sec-2 protein

Q94569

3e-67

F02A9.3†

4

MI00049.cl

63

C. elegans HSP-12, heat shock protein 20

P34328

2e-36

C14B9.1

5

MI01047.cl

63

Novel

-

-

-

6

MI00984.cl

54

M. javanica CAP-1, calponin homolog

P91763

2e-126

F28H1.2†

7

MI01045.cl

51

Rhizobium NODL, nodulation protein L

P28266

3e-56

-

8

MI00702.cl

51

C. elegans NHL repeat

P91268

4e-104

F21F3.1

9

MI00046.cl

47

C. elegans MIP/Aquaporin-3 water channel

Q21473

1e-54

M02F4.8

10

MI00487.cl

44

C. elegans ACT-2, actin 2

P10986

2e-240

M03F4.2

11

MI00784.cl

39

C. elegans MUP-2 troponin-T

Q20694

7e-107

F53A9.10

12

MI01043.cl

39

C. elegans cytidylyl transferase

Q9BL56

3e-06

Y65B4A.8

13

MI00775.cl

36

C. elegans NLP-21

Q9U2B9

5e-17

Y47D3B.2

14

MI01042.cl

34

C. elegans ADP/ATP Translocase

P91410

1e-54

T01B11.4

15

MI00483.cl

32

M. incognita ENG-1, Beta-1,4-endoglucanase

Q9UA57

1e-305

-

16

MI01040.cl

31

Novel

-

-

-

17

MI00027.cl

30

C. elegans MLC-3, myosin light chain family

P53014

2e-71

F09F7.2

18

MI01113.cl

29

Human APG-5, apoptosis specific protein

O60875

1e-16

F08.H9.4†

19

MI00774.cl

29

Dictyostelium ACRA, adenylate cyclase

Q9U9S7

2e-20

C24A8.3†

20

MI00721.cl

29

C. elegans LDH-1, l-lactate dehydrogenase

Q27888

7e-124

F13D12.2

21

MI00040.cl

29

C. elegans GST-7, glutathione S-transferase

P91254

7e-42

F11G11.2

22

MI01038.cl

28

Mouse TNRC11, Opa repeat

Q62006

5e-19

H20J18.1

23

MI00629.cl

28

C. elegans C4-type steroid receptor zinc finger

O16890

2e-23

F13A2.8

24

MI01036.cl

26

Novel

-

-

-

25

MI01034.cl

25

C. elegans arginine kinase phosphotransferase

Q10454

1e-91

F46H5.3

  1. *SW/TR is SWISS-PROT and TrEMBL Proteinknowledgebase [105]. †C. elegans homolog present but with a lower probability match than the best GenBank descriptor.