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Table 1 Segmental duplication content of the human genome

From: Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence

Chromosome

Size (bp)

Intrachromosomal duplication (bp)

% chromosome (previous)*

Interchromosomal duplication (bp)

% chromosome (previous)*

Total duplications (bp)

% chromosome (previous)**

Errors† (bp)

% chromosomes

1

246,874,334

5,278,549

2.1 (4.4)

2,854,898

1.2 (2.3)

7,056,274

2.9 (5.7)

4,369,406

1.8

2

240,681,600

4,917,160

2.0 (2.4)

3,298,723

1.4 (1.6)

6,892,585

2.9 (3.2)

2,311,522

1.0

3

194,908,136

2,128,493

1.1 (2.3)

1,654,201

0.8 (2.0)

3,146,570

1.6 (3.2)

3,979,610

2.0

4

192,019,378

2,599,650

1.4 (2.3)

2,164,382

1.1 (2.2)

4,061,432

2.1 (3.4)

2,482,740

1.3

5

180,966,400

3,519,480

1.9 (2.0)

1,464,945

0.8 (1.3)

4,530,406

2.5 (2.8)

2,297,998

1.3

6

170,309,517

2,358,252

1.4 (2.3)

743,875

0.4 (1.3)

2,877,392

1.7 (3.4)

569,918

0.3

7

157,432,793

8,636,434

5.5 (6.3)

2,614,326

1.7 (2.9)

10,139,669

6.4 (7.8)

205,130

0.1

8

143,874,322

2,318,984

1.6 (2.2)

1,125,241

0.8 (2.0)

2,612,280

1.8 (3.0)

3,956,756

2.8

9

132,438,756

7,248,232

5.5 (7.1)

4,801,871

3.6 (4.7)

8,341,767

6.3 (8.2)

1,589,734

1.2

10

134,416,750

5,279,301

3.9 (4.3)

1,375,341

1.0 (1.9)

6,334,458

4.7 (5.7)

1,250,157

0.9

11

137,442,545

3,622,080

2.6 (3.3)

1,670,412

1.2 (1.8)

4,363,619

3.2 (4.4)

2,028,875

1.5

12

131,300,572

1,894,547

1.4 (2.3)

971,490

0.7 (1.2)

2,816,187

2.1 (3.3)

3,383,730

2.6

13

113,446,104

918,255

0.8 (1.9)

1,202,102

1.1 (2.3)

1,855,806

1.6 (3.4)

146,198

0.1

14

104,324,908

531,219

0.5 (0.7)

820,880

0.8 (1.6)

1,335,177

1.3 (2.1)

13,814

0.0

15

99,217,355

4,593,233

4.6 (6.2)

2,344,618

2.4 (3.9)

5,634,201

5.7 (8.2)

1,739,894

1.8

16

81,671,585

4,917,218

6.0 (8.3)

2,228,116

2.7 (3.9)

6,012,178

7.4 (9.8)

2,113,843

2.6

17

80,052,782

4,775,137

6.0 (7.1)

646,968

0.8 (2.5)

5,274,195

6.6 (8.5)

2,145,614

2.7

18

77,516,809

525,636

0.7 (1.2)

700,654

0.9 (1.9)

1,226,290

1.6 (3.1)

1,443,775

1.9

19

60,013,307

2,700,984

4.5 (6.8)

704,757

1.2 (2.6)

3,156,687

5.3 (8.1)

335,190

0.6

20

62,842,997

592,441

0.9 (1.1)

873,152

1.4 (1.8)

1,052,248

1.7 (2.1)

147,940

0.2

21

44,626,493

481,879

1.1 (1.4)

1,303,776

2.9 (5.1)

1,504,333

3.4 (5.2)

0

0.0

22

47,748,585

1,741,766

3.6 (6.7)

1,374,363

2.9 (7.4)

2,770,386

5.8 (10.9)

0

0.0

X

14,924,9818

2,625,206

1.8 (3.6)

2,927,714

2.0 (2.3)

5,518,712

3.7 (5.5)

2,185,046

1.5

Y

58,368,225

5,959,836

10.2 (28.4)

3,524,276

6.0 (25.0)

8,461,355

14.5 (40.7)

56,204

0.1

Un‡

1,391,854

179,709

12.9 (20.4)

378,110

27.2 (32.6)

407,013

29.2 (36.5)

116,923

8.4

Total

3,043,135,925

80,343,681

2.6 (3.8)

43,769,191

1.4 (2.6)

107,381,220

3.5 (5.2)

38,870,017

1.3

  1. *Previous data on segmental duplications distributed by chromosomes as reported in [8]. †Errors represent data that were detected as potential sequence misassignments. ‡Un, unmapped chromosome sequence.
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Genome Biology

ISSN: 1474-760X

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