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Table 3 Motif representation

From: Characterizing the stress/defense transcriptome of Arabidopsis

(a) Motifs over-represented in the stress cDNA collection
Motif name Motif sequence p-value Promoters Libraries  
ABRE-like [95] BACGTGKM 3.83E-05 271 Aoz, VPP, MJ  
GBF[74] CACGTG 3.50E-04 197 MJ  
WRKY [70] TTGACY 0.0051 732 Aoz  
WRKY-like [16] BBWGACYT 0.0038 635 Aoz  
SA-induced (LS7) [96] ACGTCA 0.0003 273 Aoz, SA  
TGA1 [74] TGACG 0.0067 607 Aoz, Coz, VPP  
(b) Motifs over-represented in individual stress libraries
Motif name Motif sequence p-value Promoters with motif Library Promoters in library
HBF [89] CCTACC 0.00764 19 DC 108
HSE [102] CTNGAANNTTCNA 0.03404 6 Rpm 165
AtMyb4 [101] AMCWAMC 0.04328 134 Rpm 165
MYC [95] CACATG 0.02338 32 SA 67
  1. GBF, G-box factor. For other abbreviations see text and Table 2.