Table 3 Motif representation
From: Characterizing the stress/defense transcriptome of Arabidopsis
(a) Motifs over-represented in the stress cDNA collection | |||||
|---|---|---|---|---|---|
Motif name | Motif sequence | p-value | Promoters | Libraries | Â |
ABRE-like [95] | BACGTGKM | 3.83E-05 | 271 | Aoz, VPP, MJ | Â |
GBF[74] | CACGTG | 3.50E-04 | 197 | MJ | Â |
WRKY [70] | TTGACY | 0.0051 | 732 | Aoz | Â |
WRKY-like [16] | BBWGACYT | 0.0038 | 635 | Aoz | Â |
SA-induced (LS7) [96] | ACGTCA | 0.0003 | 273 | Aoz, SA | Â |
TGA1 [74] | TGACG | 0.0067 | 607 | Aoz, Coz, VPP | Â |
(b) Motifs over-represented in individual stress libraries | |||||
Motif name | Motif sequence | p-value | Promoters with motif | Library | Promoters in library |
HBF [89] | CCTACC | 0.00764 | 19 | DC | 108 |
HSE [102] | CTNGAANNTTCNA | 0.03404 | 6 | Rpm | 165 |
AtMyb4 [101] | AMCWAMC | 0.04328 | 134 | Rpm | 165 |
MYC [95] | CACATG | 0.02338 | 32 | SA | 67 |