Table 2 Summary of all libraries used for statistical analysis and correlation coefficients for comparisons made between SAGE libraries
Library name | Source | Tag number |
ONL1 | Adult mouse retina outer nuclear layer | 26,016 |
ONL2 | Same starting library as ONL1, but represents the second 26,000 tags sequenced in that library | 25,956 |
P2.5A | P2.5 C57B/6 whole-mouse retina | 23,525 |
P2.5B | Same ditag ligation as P2.5A was used to make the library, but ditag ligation stored at -20°C for 3 months before generation of library | 23,566 |
Crx+/+A | P10.5 whole retina from Crx+/+ mice (hybrid of C57B/6 and Sv129) | 17,441 |
Crx+/+B | Same mRNA sample as in Crx+/+A was used to make the library | 17,422 |
41-year-old peripheral retina | 41-year-old Japanese male | 23,662 |
44-year-old peripheral retina | 44-year-old American caucasian male | 23,758 |
88-year-old peripheral retina | 88-year-old American caucasian female | 23,773 |
P6.5A | P6.5 whole retina from three different C57B/6 littermate mice. Tissue stored at -80°C for 1 week before library preparation | 25,466 |
P6.5B | P6.5 whole retina from three different C57B/6 littermate mice, from same litter as for P6.5A. Tissue stored at -80°C for 6 months before library preparation | 25,473 |
Hypothalamus A | 8-week-old male C57B/6 mouse hypothalamus from three different individuals. Animals housed at facilities in Boston, MA | 48,978 |
Hypothalamus B | 8-week-old male C57B/6 mouse hypothalamus from 20 different individuals. Animals housed at facilities in Melbourne, Australia | 48,953 |
Adult whole retina A | 8-week-old male total C57B/6 mouse retina | 48,964 |
Adult whole retina B | 8-week-old male total C57B/6 mouse retina (same library as adult total retina A) | 28,593 |
3T3 cells | Mouse 3T3 fibroblast cell line | 28,531 |