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Figure 4 | Genome Biology

Figure 4

From: Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells

Figure 4

Clustered image maps (CIMs) for co-clustering of the cDNA- and oligo-array expression patterns [4, 11]. Cell-line origin abbreviations as in Figure 3. Each gene-expression pattern is designated as coming from the cDNA or oligo array set. (a) CIM for the combined set of 3,297 oligo and cDNA transcripts. Of the UniGene-matched cDNA-oligo pairs, 55.4% (827 out of 1,493) appeared side by side in the tree, and an additional 4.4% (65 out of 1,493) were separated by five or fewer locations. (b) Magnified view of the portion of the CIM occupied by melanoma genes.

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Genome Biology

ISSN: 1474-760X

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