From: Identifying biological themes within lists of genes with EASE
Method | A | B | C | D | E | F | G | H | Â | Â |
---|---|---|---|---|---|---|---|---|---|---|
Normalization | MAS 4 | MAS 4 | dChip | dChip | Rank remap | Rank remap | NP | NP | Â | Â |
Intensity calculation | MAS 4 | MAS 4 | dChip | dChip | dChip | dChip | dChip | dChip | Â | Â |
Gene selection | t-test | SAM | t-test | SAM | t-test | SAM | t-test | SAM | System | Category |
 | <0.0001 (1) | 0.0002 (1) | 0.0004 (1) | <0.0001 (1) | 0.0005 (2) | <0.0001 (4) | <0.0001 (1) | <0.0001 (1) | SWISS-PROT keyword | Interferon induction |
 | 0.0006 (2) | 0.0027 (2) | 0.0383 (4) | < 0.0001 (2) | <0.0001 (1) | <0.0001 (1) | <0.0001 (2) | <0.0001 (3) | Biological process | Response to biotic stimulus |
 | 0.0036 (5) | 0.0061 (3) | NS (5) | < 0.0001 (4) | 0.0005 (3) | <0.0001 (2) | <0.0001 (4) | <0.0001 (4) | Biological process | Immune response |
 | 0.0031 (4) | 0.0081 (4) | NS (7) | < 0.0001 (5) | 0.0006 (4) | <0.0001 (3) | <0.0001 (3) | <0.0001 (2) | Biological process | Defense response |
 | 0.0333 (6) | NS (7) | 0.0329 (3) | < 0.0001 (3) | 0.0128 (6) | <0.0001 (5) | 0.0003 (5) | <0.0001 (5) | Biological process | Response to external stimulus |
 | 0.0008 (3) | 0.0101 (5) | 0.0308 (2) | < 0.0001 (6) | 0.0078 (5) | 0.0002 (6) | 0.0558 (8) | 0.0071 (8) | Molecular function | Antiviral response protein |