From: Identifying biological themes within lists of genes with EASE
 |  |  | Method | A | B | C | D | E | F | G | H |
---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  | Normalization | MAS 4 | MAS 4 | dChip | dChip | Rank remap | Rank remap | NP | NP |
 |  |  | Intensity calculation | MAS 4 | MAS 4 | dChip | dChip | dChip | dChip | dChip | dChip |
Method | Normalization | Intensity calculation | Gene selection | t-test | SAM | t-test | SAM | t-test | SAM | t-test | SAM |
A | MAS 4 | MAS 4 | t-test | [72] | 72 (60%) | 20 (7%) | 17 (12%) | 18 (8%) | 19 (12%) | 24 (8%) | 22 (10%) |
B | MAS 4 | MAS 4 | SAM | Â | [120] | 27 (9%) | 22 (12%) | 25 (9%) | 25 (13%) | 34 (10%) | 31 (12%) |
C | dChip | dChip | t-test | Â | Â | [220] | 81 (36%) | 130 (48%) | 70 (27%) | 105 (29%) | 71 (22%) |
D | dChip | dChip | SAM | Â | Â | Â | [86] | 56 (27%) | 55 (40%) | 49 (18%) | 47 (27%) |
E | Rank remap | dChip | t-test | Â | Â | Â | Â | [180] | 95 (50 %) | 109 (35%) | 76 (32%) |
F | Rank remap | dChip | SAM | Â | Â | Â | Â | Â | [105] | 68 (24%) | 67 (59%) |
G | NP | dChip | t-test | Â | Â | Â | Â | Â | Â | [242] | 154 (59%) |
H | NP | dChip | SAM | Â | Â | Â | Â | Â | Â | Â | [173] |